View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_73 (Length: 250)
Name: NF17168_high_73
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_73 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 8680296 - 8680047
Alignment:
| Q |
1 |
gaatgagaaagaagaagcagaagctcaagtggaaatatggaaatacatatttggttttgctgaccaagctgtggtgaaatgtgcaattgaacttggtata |
100 |
Q |
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| T |
8680296 |
gaatgagaaagaagaagcagaagctcaagtggaaatatggaaatacatatttggttttgctgaccaagctgtggtgaaatgtgcaattgaacttggtata |
8680197 |
T |
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| Q |
101 |
gctgaagccattgaaaagcatgggaaacccatgtcactattagagttatcatcaactctagaatgcaatccttcatatcttaaccgtatcatgagattcc |
200 |
Q |
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| T |
8680196 |
gctgaagccattgaaaagcatgggaaaccaatgtcactattagagttatcatcaactctaggatgcaatccttcatatcttaaccgcatcatgagattcc |
8680097 |
T |
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| Q |
201 |
taatacataggaagatattcaaaactatatctaccaaccatgaaaactat |
250 |
Q |
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| T |
8680096 |
taatacacaggaagatattcaaaaccatatctaccaaccatgaaaactat |
8680047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 37742477 - 37742242
Alignment:
| Q |
8 |
aaagaagaagcagaagctcaagtggaaatatggaaatacatatttggttttgctgaccaagctgtggtgaaatgtgcaattgaacttggtatagctgaag |
107 |
Q |
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| T |
37742477 |
aaagaagaagcagaagctcaagtagaaatatggaagtacatatttggttttgttgagctagctgtagtgaaatgtgcaattgaacttggtatagctgaag |
37742378 |
T |
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| Q |
108 |
ccattgaaaagcatgggaaacccatgtcactattagagttatcatcaactctagaatgcaatccttcatatcttaaccgtatcatgagattcctaataca |
207 |
Q |
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| T |
37742377 |
ccattgaaaagcacaaaaaacccatgtcactactagagttatcatcaactctaaaatgtgattcttcatatgttaaccgtatcatgagattcctagtaca |
37742278 |
T |
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| Q |
208 |
taggaagatattcaaaactatatctaccaaccatga |
243 |
Q |
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| T |
37742277 |
taggaaaatatttaaaaccatgaataccaaccatga |
37742242 |
T |
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