View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_75 (Length: 250)
Name: NF17168_high_75
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_75 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 5355970 - 5356091
Alignment:
| Q |
122 |
aattgaatattagttataaacactccgtccggcaatatttcagaagttacgtgcatggttaataaattggcacgctttcctcgtgcagacaact----ca |
217 |
Q |
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| T |
5355970 |
aattgaatattagttataaacactccgtccggcaatatttcagaagttacgtgcatggttaataaattggcacgctttcctcgtgcagacaactcacaca |
5356069 |
T |
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| Q |
218 |
cacaccaaacgttggccccttt |
239 |
Q |
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| T |
5356070 |
cacaccaaacgttggccccttt |
5356091 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 5355899 - 5355946
Alignment:
| Q |
20 |
ataaattacaaaagttaaaagtacgatagcgaatagttaatttgtacc |
67 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5355899 |
ataaattacaaaagttaaaagtacgttagcgaatagttaatttgtacc |
5355946 |
T |
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