View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_high_81 (Length: 240)

Name: NF17168_high_81
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_high_81
NF17168_high_81
[»] chr8 (1 HSPs)
chr8 (1-223)||(16390274-16390496)
[»] chr6 (8 HSPs)
chr6 (1-223)||(11707037-11707259)
chr6 (1-223)||(11666277-11666499)
chr6 (6-223)||(11628765-11628982)
chr6 (6-222)||(11670671-11670887)
chr6 (1-223)||(11621536-11621758)
chr6 (8-223)||(12089981-12090196)
chr6 (8-195)||(11759255-11759442)
chr6 (6-223)||(11736334-11736551)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-223)||(5342-5551)
[»] scaffold0196 (1 HSPs)
scaffold0196 (5-223)||(15944-16162)
[»] chr1 (1 HSPs)
chr1 (6-222)||(44814683-44814899)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16390274 - 16390496
Alignment:
Q  1 cccggtaaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  16390274 cccggtaaaaagcgtaggatcttgaggtataatgccaaaacgcgacctcaaatcatgaaggccaatagatgagatgtcaacgccatcaattataatgttt 16390373  T
Q  101 cctcctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16390374 cctcctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctacttcgaatg 16390473  T
Q  201 tgcatgtgatcccatgaagtaca 223  Q
    |||||||||||||||||||||||    
T  16390474 tgcatgtgatcccatgaagtaca 16390496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11707037 - 11707259
Alignment:
Q  1 cccggtaaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatattt 100  Q
    |||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||| | ||||||||  ||||| |||    
T  11707037 cccgttaaaaagcgtaggatcttgaggtataatcccaaaatgcgacctcaaatcatgaaggccaatagatgagatgtctatgccatcaaccataatgttt 11707136  T
Q  101 cctcctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatg 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11707137 cctcctgttggttccacaagacgaaataaagcactaataagagtggatttcccgctgcctgttcttccgacaataccaatcttgtgacctgcttcaaatg 11707236  T
Q  201 tgcatgtgatcccatgaagtaca 223  Q
    |||||||||| ||||||||||||    
T  11707237 tgcatgtgataccatgaagtaca 11707259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11666499 - 11666277
Alignment:
Q  1 cccggtaaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatattt 100  Q
    |||| ||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||| | |||||||| ||  |  |||    
T  11666499 cccgttaaaaagtgtaggatcttgaggtataattccaaaacgtgacctcaaatcatgaaggccaatagatgagatgtctatgccatcaactacgactttt 11666400  T
Q  101 cctcctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatg 200  Q
    ||| | | ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||    
T  11666399 ccttcggttggttccacaagacgaaataaagcactgataagagtggatttcccactgcctgttcttccaacaataccaatcttgtgacctgcttcaaatg 11666300  T
Q  201 tgcatgtgatcccatgaagtaca 223  Q
    ||||||||||||| |||||||||    
T  11666299 tgcatgtgatcccgtgaagtaca 11666277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 11628765 - 11628982
Alignment:
Q  6 taaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcc 105  Q
    ||||||| |||||||| ||||||||||| |||||||| | ||||||||||||||| | ||||||||| ||||| |  ||||||| |||||| || |||||    
T  11628765 taaaaagggtaggatcctgaggtataataccaaaacgtgacctcaaatcatgaagaccaatagatgatatgtctattccatcaactataattttgcctcc 11628864  T
Q  106 tgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgcat 205  Q
    || ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||| |||||||||    
T  11628865 tgctggttccacaagacgaaataaagcactgataagagtggatttcccactgcctgttcttccgacgataccaatcttatgccctgcttcaaatgtgcat 11628964  T
Q  206 gtgatcccatgaagtaca 223  Q
    ||||||||||||||||||    
T  11628965 gtgatcccatgaagtaca 11628982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 11670671 - 11670887
Alignment:
Q  6 taaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcc 105  Q
    ||||||| ||||| || ||||||||||| |||||||| | ||||||||||||||| | ||||||||| ||||| |  ||||| | |||||| ||||||||    
T  11670671 taaaaagggtaggctcctgaggtataataccaaaacgtgacctcaaatcatgaagaccaatagatgatatgtctattccatcgactataatttttcctcc 11670770  T
Q  106 tgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgcat 205  Q
    || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  11670771 tgctggttccacaagacgaaataaagcactgataagagtggatttcccgctgcctgttcttccgacgataccaatcttgtgccctgctttgaatgtgcat 11670870  T
Q  206 gtgatcccatgaagtac 222  Q
    |||||||| ||||||||    
T  11670871 gtgatcccgtgaagtac 11670887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11621758 - 11621536
Alignment:
Q  1 cccggtaaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatattt 100  Q
    |||| ||||||| |||||||||||||||||||| |||||||| | |||||||||||| |||| |||||||||||| || | |||||||| || ||| |||    
T  11621758 cccgttaaaaagtgtaggatcttgaggtataataccaaaacgtgacctcaaatcatgtaggccaatagatgagatatctatgccatcaactacaattttt 11621659  T
Q  101 cctcctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatg 200  Q
    || |||| |||||||||||| |||||||||||||  ||||||||||| || || ||||||||||| || |||||||||||||||||||||||||  ||||    
T  11621658 ccacctgctggttccacaaggcgaaataaagcaccgataagagtggacttcccactgcctgttctgccaacaataccaatcttgtgacctgctttaaatg 11621559  T
Q  201 tgcatgtgatcccatgaagtaca 223  Q
    | |||||||| ||||||||||||    
T  11621558 tacatgtgatgccatgaagtaca 11621536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 12089981 - 12090196
Alignment:
Q  8 aaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcctg 107  Q
    ||||| |||||||| ||||||||||| |||||||  | |||||| |||||||||| ||||||||| ||||| |  ||||| | |||||| || ||||| |    
T  12089981 aaaagggtaggatcctgaggtataataccaaaacttgacctcaagtcatgaaggccaatagatgatatgtctattccatcgactataattttgcctcccg 12090080  T
Q  108 atggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgcatgt 207  Q
      || |||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||| |||| || |||||  |    
T  12090081 tcggctccacaagacgaaacaaagcaccaatcagagttgattttccgctgccagttctaccgacaataccaatcttgtgccctccttcaaaggtgcaatt 12090180  T
Q  208 gatcccatgaagtaca 223  Q
    ||| ||||| ||||||    
T  12090181 gataccatgtagtaca 12090196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 11759442 - 11759255
Alignment:
Q  8 aaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcctg 107  Q
    |||||||||||||| |||||||| ||||||||||  | |||||| |||||||||| ||||||||| ||||| |  ||||| | |||||| || |||||      
T  11759442 aaaagcgtaggatcctgaggtattatgccaaaacttgtcctcaagtcatgaaggccaatagatgatatgtctattccatcgactataattttgcctccca 11759343  T
Q  108 atggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttc 195  Q
      || |||||||||||||| |||||||  || || || |||||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  11759342 cgggctccacaagacgaaacaaagcacctatcagtgtagattttccgctgccagttctaccgacaataccaatcttgtgccctccttc 11759255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 11736334 - 11736551
Alignment:
Q  6 taaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcc 105  Q
    ||||||| |||||||| ||||||||||| |  ||||  | |||||| |||||||||| |||||| || ||||  |  ||||||||||||||  | |||||    
T  11736334 taaaaagggtaggatcctgaggtataatacttaaacttgacctcaagtcatgaaggccaatagacgatatgtttattccatcaattataattctgcctcc 11736433  T
Q  106 tgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgcat 205  Q
       ||| |||||||| ||||| |||||||  || ||||| ||||| |||||||| |||||||| ||||||||||||||||| ||| |||||||||||||     
T  11736434 ctctggctccacaagtcgaaacaaagcacctatcagagttgatttcccgctgcccgttcttccaacaataccaatcttgtgtcctccttcgaatgtgcaa 11736533  T
Q  206 gtgatcccatgaagtaca 223  Q
     | || ||||||||||||    
T  11736534 tttataccatgaagtaca 11736551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 5342 - 5551
Alignment:
Q  14 gtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcctgatggtt 113  Q
    |||||||| |||||||||||  ||||||||| ||||||||| ||||||| ||||||||| ||||| |  ||||||| |||||| || ||||||| |||||    
T  5342 gtaggatcctgaggtataatcgcaaaacgcgacctcaaatcttgaaggccaatagatgatatgtctagtccatcaactataattttccctcctgctggtt 5441  T
Q  114 ccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgcatgtgatccc 213  Q
    |||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| ||||||   || ||||||||||||||    
T  5442 ccactagacgaaataaagcactaataagagtggatttcccacttcctgttcttccaacaataccaatcttgtgccctgctgtaaacgtgcatgtgatccc 5541  T
Q  214 atgaagtaca 223  Q
     | |||||||    
T  5542 gtcaagtaca 5551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 16162 - 15944
Alignment:
Q  5 gtaaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctc 104  Q
    ||||||||  ||||||| ||||||||||| || ||||| | ||||||||||||||| |  |||||||  ||||| |  ||||| |||||||| || ||||    
T  16162 gtaaaaaggataggatcctgaggtataatacccaaacgtgacctcaaatcatgaagaccgatagatgttatgtctattccatcgattataattttccctc 16063  T
Q  105 ctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgca 204  Q
    ||| |||||||||||||||||||| |||||||||||| |||||||| || | |||||||||||| ||||||||||||||| | |||| ||| ||||||||    
T  16062 ctgctggttccacaagacgaaatagagcactaataagtgtggatttcccacagcctgttcttccaacaataccaatcttgcggcctggttcaaatgtgca 15963  T
Q  205 tgtgatcccatgaagtaca 223  Q
    |||||||||||||||||||    
T  15962 tgtgatcccatgaagtaca 15944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 44814899 - 44814683
Alignment:
Q  6 taaaaagcgtaggatcttgaggtataatgccaaaacgcggcctcaaatcatgaaggcgaatagatgagatgtcaacgccatcaattataatatttcctcc 105  Q
    ||||||| ||||| || ||||||||||| |||||||| | ||||||||||||||| | ||| ||   |||||||| ||||||||  || || ||||| ||    
T  44814899 taaaaagagtagggtcctgaggtataataccaaaacgtgacctcaaatcatgaagtccaatggaaccgatgtcaatgccatcaacaatgatttttccacc 44814800  T
Q  106 tgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatcttgtgacctgcttcgaatgtgcat 205  Q
     | ||| ||||| |||||||||||||| | |||||||||||  || || || || || |  || || |||||||| ||||| ||| |||| ||||| |||    
T  44814799 cgctggctccactagacgaaataaagcgccaataagagtggtcttgccacttccggtgcgaccaactataccaattttgtgtcctccttcaaatgtacat 44814700  T
Q  206 gtgatcccatgaagtac 222  Q
    ||||||||  |||||||    
T  44814699 gtgatcccgcgaagtac 44814683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University