View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_9 (Length: 535)
Name: NF17168_high_9
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 47378898 - 47378383
Alignment:
| Q |
1 |
ataaagctcagagaaaaatatataaatatgacaggccaatttgtaactcactgttcatcgattcttggatagaaatcatagatttgataattcacacttt |
100 |
Q |
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| T |
47378898 |
ataaagctcagagaaaaatatataaatatgaccggccaatttgtaactcactgttcatcgattcttggatagaaatcatagatttgataattcacacttt |
47378799 |
T |
|
| Q |
101 |
ccttgagacttacacatgcagttgtatcacttaatttgttgtatgtatatataatattcataaactataacctggtaacgtcatatacatgtggtagatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47378798 |
ccttgagacttacacatgcagttgtatcacttaatttgttgtatgtatatataatattcataaactataacctggtaacgtcatatgcatgtggtagatt |
47378699 |
T |
|
| Q |
201 |
actaagtgtgtgtttgaaaaacctaaaaacaatgaaaaatcaaggtgacacatctatcaatattctcttactcaaatatagttaatgtcagactcctatg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47378698 |
accaagtgtgtgtttgaaaaacctaaaaacaatgaaaaatcaaggtgacacatctatcaatattctcttactcaaatatagttaatgtcagactcctatg |
47378599 |
T |
|
| Q |
301 |
acattaggaaggtgatctcatttatatcttactctacatctactttttcatctaatatatgaggcttctaattcaaacttgacacaattgtcgtgtggta |
400 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |
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| T |
47378598 |
acattaggtaggtgatctcatttatatcttacactacatctactttttcatctaatatacgaggcttctaactcaaacttgacacaattgtcgtgtagta |
47378499 |
T |
|
| Q |
401 |
aatgtgagttagaaatctcatatattggatataaaagtgaatgttgaacaacatataagaatcatacaatcctaaagttttcaataaaaatatggtgtca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47378498 |
aatgtgagttagaaatctcatatattggatataaaagtgaatgttgaacaacatataagaatcatacaatcctaaagttttcaataaaaatatggtgtca |
47378399 |
T |
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| Q |
501 |
aaatctctttatgtgg |
516 |
Q |
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|||||||||||||||| |
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| T |
47378398 |
aaatctctttatgtgg |
47378383 |
T |
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