View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_90 (Length: 234)
Name: NF17168_high_90
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_90 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 12631072 - 12631305
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631072 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
12631171 |
T |
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| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12631172 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcctttactcataagtg |
12631271 |
T |
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| Q |
201 |
tctatccatgcatttcttgaacttttcatctttt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
12631272 |
tctatccatgcatttcttgaacttttcatctttt |
12631305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45288882 - 45289115
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288882 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
45288981 |
T |
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| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45288982 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctaatatttttgtagttcatgaaagtttctatttgcctttactcataagtg |
45289081 |
T |
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| Q |
201 |
tctatccatgcatttcttgaacttttcatctttt |
234 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
45289082 |
tctatcgatgcatttcttgaacttttcatctttt |
45289115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31607904 - 31607683
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607904 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
31607805 |
T |
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| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
31607804 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcatttactcataagtg |
31607705 |
T |
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| Q |
201 |
tctatccatgcatttcttgaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31607704 |
tctatccatgcatttcttgaac |
31607683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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