View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_91 (Length: 233)
Name: NF17168_high_91
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_91 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 55173566 - 55173361
Alignment:
| Q |
19 |
tagttatgttcagtgggccgcaaatatggcagtggccttggacataggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
118 |
Q |
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| T |
55173566 |
tagttatgttcagtgggccgcaaatatggcagtggccttggacatcggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
55173467 |
T |
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| Q |
119 |
aattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgt |
218 |
Q |
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| T |
55173466 |
aattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgt |
55173367 |
T |
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| Q |
219 |
gatgat |
224 |
Q |
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| |||| |
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| T |
55173366 |
ggtgat |
55173361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 27721243 - 27721296
Alignment:
| Q |
65 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
118 |
Q |
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| T |
27721243 |
ggagttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt |
27721296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
| Q |
65 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
118 |
Q |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt |
42989290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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