View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_92 (Length: 229)
Name: NF17168_high_92
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_92 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 54103103 - 54102894
Alignment:
| Q |
4 |
gcgcagctcgttgtctgtttgcttttcattccgtaaaacttcctctcaatagtcttggtcaaaaataaatacaggttttgatggagtggagatacatgga |
103 |
Q |
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| T |
54103103 |
gcgcaactcgttgtttgtttgcttttcattccgtaaaacttcctctcaatagtcttggtcaaaaataaatacaggttttgatggagtggagatacatgga |
54103004 |
T |
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| Q |
104 |
gctaatggatacttgcttgatcaattcctaaaggacaaagtgaacgatagagatgacgggtatggagggagcttagaaaatcgttgtcgcttccctctag |
203 |
Q |
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| T |
54103003 |
gctaatggatacttgcttgatcaattcctaaaggacaaagtgaacgatagagatgacgagtatggagggagcttagaaaatcgttgtcgcttccctctag |
54102904 |
T |
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| Q |
204 |
aggttgtgaa |
213 |
Q |
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|||||||||| |
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| T |
54102903 |
aggttgtgaa |
54102894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 44171443 - 44171371
Alignment:
| Q |
75 |
caggttttgatggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaa |
147 |
Q |
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| T |
44171443 |
caggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaa |
44171371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 44191739 - 44191667
Alignment:
| Q |
75 |
caggttttgatggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaa |
147 |
Q |
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| T |
44191739 |
caggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaa |
44191667 |
T |
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