View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_11 (Length: 527)
Name: NF17168_low_11
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 187 - 519
Target Start/End: Complemental strand, 16420944 - 16420610
Alignment:
| Q |
187 |
taatatctttaatcatttgtcatttcaattgtatgagtaaaattgtcctaaaaagacgacaattaaaaaggaacataagaatgttaatttttaccatcct |
286 |
Q |
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| T |
16420944 |
taatatctttaatcatttatcatttcaattgtatgagtaaaattttcctacaaagacgataattaaaaaggaacataagagtgttaatttttaccatcct |
16420845 |
T |
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| Q |
287 |
agtagtttatttggttttgtccttatacacacacatagatgtaccaatatgatggccatgctaaaatatgatatgataactc--tatcatattcatatat |
384 |
Q |
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| T |
16420844 |
agtagtttgtttggttttgtccttatacacacacataggtgtaccagtatgatggtcatgctaaaacatgatatgataactctatatcatattcatatat |
16420745 |
T |
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| Q |
385 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctattctggtttgtctttgtattcatgagtataagttgggttagaaatatcttat |
484 |
Q |
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| T |
16420744 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctatcctgatttgtctttgtattcatgagtataagttgggttagaaatatcttat |
16420645 |
T |
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| Q |
485 |
catgattaaaaactcatttcttatcttttcatctc |
519 |
Q |
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| T |
16420644 |
catgattagaaactcatttcttatcttttcatctc |
16420610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2093473 - 2093534
Alignment:
| Q |
1 |
aaacatctttggtaatggagcatcgttatgtgttattaatgattttttgacacaaaataaataaaatata |
70 |
Q |
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| T |
2093473 |
aaacatctttggtaatggagcatc-------gttattaatga-tatttgacacaaaataaataaaatata |
2093534 |
T |
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