View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_12 (Length: 520)
Name: NF17168_low_12
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 147 - 392
Target Start/End: Complemental strand, 30381299 - 30381054
Alignment:
| Q |
147 |
ggtagtcggagttaataataatctattctaaccttaaggaatgtcccaactcttgatttatttatttataaaaagatccttttgatttgcattatacttg |
246 |
Q |
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| T |
30381299 |
ggtagttggagttaataataatctattctaaccttaaggaatgtcccaactcttgatttatttatttataaaaagatccttttgatttgcattatacttg |
30381200 |
T |
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| Q |
247 |
gaaactatttgtagtattcttgattttgaatgaataaggttaatttaaagtnnnnnnnnncttaaggatccttggagtgtctttgaatttggttataaaa |
346 |
Q |
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| T |
30381199 |
gaaactatttgtagtattcttgattttgaatgaatgaggttaatttaaagtaaaaaaaaacttaaggatccttggagtgtctttgaatttggttataaaa |
30381100 |
T |
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| Q |
347 |
aattctaagaaaataacaatttatgacagccaaacgcttcaatgta |
392 |
Q |
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| T |
30381099 |
aattctaagaaaataacaatttatgacagccaaacgcttcaatgta |
30381054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 30381436 - 30381330
Alignment:
| Q |
10 |
aagaatatatgagtcagaatgtcaatctttaccnnnnnnntaaataagttgaggcagaatactagtaatctcaaaagttcttttccaatataacattgat |
109 |
Q |
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| T |
30381436 |
aagaatatatgagtcagaatgtcaatctttaccaaaaaaataaataagttgaggcagaatactagtaatctcaaaagttattttccaatataacattgat |
30381337 |
T |
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| Q |
110 |
atcacaa |
116 |
Q |
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| T |
30381336 |
atcacaa |
30381330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 430 - 506
Target Start/End: Complemental strand, 30380987 - 30380911
Alignment:
| Q |
430 |
gacgagttattcaaattcttgttcttaagcagtggatcattctcgcactaaccaacgcttgatgtatgtcaaacatg |
506 |
Q |
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| T |
30380987 |
gacgagttattcaaattcttgttcttaagcagtggattattctcgcactaaccaacgcttgatatatgccaaacatg |
30380911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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