View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_14 (Length: 516)

Name: NF17168_low_14
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_low_14
NF17168_low_14
[»] chr7 (1 HSPs)
chr7 (24-500)||(36568080-36568556)
[»] chr1 (2 HSPs)
chr1 (402-499)||(21038373-21038470)
chr1 (414-493)||(41939369-41939448)
[»] chr8 (2 HSPs)
chr8 (404-499)||(13518754-13518849)
chr8 (404-499)||(13608287-13608382)
[»] chr2 (1 HSPs)
chr2 (417-499)||(41937599-41937681)
[»] chr5 (1 HSPs)
chr5 (409-470)||(22296658-22296719)


Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 24 - 500
Target Start/End: Original strand, 36568080 - 36568556
Alignment:
Q  24 aacaacaataaccatacctttttccactatcatcatcatatttcctcttcttcaccaccttctcctcctctaagagaagaactacctcttttaaacctaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36568080 aacaacaataaccatacctttttccactatcatcatcatatttcctcttcttcaccaccttctcctcctctaagagaagaactacctcttttaaacctaa 36568179  T
Q  124 ttccaacaaaacaagaaaaatatgatgaagatcaacaagaacatgaggtggatattcaagaccttccttgcactgccatggatttagaagaaagggaaga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36568180 ttccaacaaaacaagaaaaatatgatgaagatcaacaagaacatgaggtggatattcaagaccttccttgcactgccatggatttagaagaaagggaaga 36568279  T
Q  224 agatggtagtagtagaactactactgttactgttgcacttcacataggtttgccaaaccctagtgctgctgaaatggcttctgtactttcttcctctaat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36568280 agatggtagtagtagaactactactgttactgttgcacttcacataggtttgccaaaccctagtgctgctgaaatggcttctgtactttcttcctctaat 36568379  T
Q  324 aactcctcagagatcattgtcactgataaagaacatggtggtgaggattcttgttcaggattcatggttaataataggcttaacaaaggacaatattgga 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36568380 aactcctcagagatcattgtcactgataaagaacatggtggtgaggattcttgttcaggattcatggttaataataggcttaacaaaggacaatattgga 36568479  T
Q  424 tccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36568480 tccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatat 36568556  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 499
Target Start/End: Complemental strand, 21038470 - 21038373
Alignment:
Q  402 cttaacaaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagata 499  Q
    |||||||| || || ||||||||||||||||||||||| ||||| |||||||| || || |||||||| |||||||||| |||||| ||||| |||||    
T  21038470 cttaacaagggtcagtattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagata 21038373  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 41939369 - 41939448
Alignment:
Q  414 caatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaa 493  Q
    ||||||||||||||| ||||| ||||||| ||  ||||||| || ||||| |||||| ||||||||  |||||| |||||    
T  41939369 caatattggatcccttctcctgctcaaatccttgttggtcctacccagttttcttgcactgtttgcaacaaaaccttcaa 41939448  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 13518849 - 13518754
Alignment:
Q  404 taacaaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagata 499  Q
    |||||| || || |||||||| || || ||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| |||||    
T  13518849 taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagata 13518754  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 13608382 - 13608287
Alignment:
Q  404 taacaaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagata 499  Q
    |||||| || || |||||||| || || ||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| |||||    
T  13608382 taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagata 13608287  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 499
Target Start/End: Original strand, 41937599 - 41937681
Alignment:
Q  417 tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagata 499  Q
    |||||||||||||| ||| |||| ||||| || |||||||| ||||| || |||||| |||| | ||| || |||||||||||    
T  41937599 tattggatccctacccctgctcagattctaatcggtccaacacagttttcatgccctctttgtttcaagaccttcaatagata 41937681  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 22296719 - 22296658
Alignment:
Q  409 aaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgc 470  Q
    |||| ||||||||||| ||| | ||| ||||||| |||||||| ||||| ||||||||||||    
T  22296719 aaggtcaatattggattccttcacctgctcaaatcctcattggaccaacacagttctcttgc 22296658  T

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