View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_16 (Length: 507)

Name: NF17168_low_16
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_low_16
NF17168_low_16
[»] chr5 (11 HSPs)
chr5 (17-273)||(6408952-6409207)
chr5 (17-257)||(6411726-6411954)
chr5 (302-379)||(6408546-6408623)
chr5 (466-507)||(6408903-6408944)
chr5 (306-386)||(25868016-25868096)
chr5 (302-385)||(21102290-21102373)
chr5 (321-386)||(16060810-16060875)
chr5 (302-386)||(7634068-7634152)
chr5 (321-382)||(9942721-9942782)
chr5 (302-347)||(43275516-43275561)
chr5 (302-386)||(34954924-34955008)
[»] chr6 (5 HSPs)
chr6 (302-386)||(5741517-5741601)
chr6 (302-386)||(5741179-5741263)
chr6 (316-386)||(30746566-30746636)
chr6 (301-386)||(1860282-1860367)
chr6 (302-386)||(11599971-11600055)
[»] scaffold0276 (1 HSPs)
scaffold0276 (309-386)||(3628-3705)
[»] chr2 (11 HSPs)
chr2 (302-386)||(42882456-42882540)
chr2 (319-416)||(42808624-42808721)
chr2 (302-386)||(42807372-42807456)
chr2 (435-475)||(42807544-42807584)
chr2 (302-349)||(3815723-3815770)
chr2 (347-386)||(19004969-19005008)
chr2 (306-376)||(745802-745872)
chr2 (309-386)||(5289776-5289853)
chr2 (302-386)||(3816374-3816458)
chr2 (302-382)||(9826695-9826775)
chr2 (306-382)||(38571565-38571641)
[»] scaffold0007 (2 HSPs)
scaffold0007 (302-386)||(187460-187544)
scaffold0007 (302-386)||(256392-256476)
[»] chr8 (7 HSPs)
chr8 (306-386)||(45156435-45156515)
chr8 (306-386)||(7130682-7130762)
chr8 (307-378)||(45155926-45155997)
chr8 (302-355)||(2784958-2785011)
chr8 (302-386)||(9512480-9512564)
chr8 (319-365)||(39046599-39046645)
chr8 (304-386)||(36933395-36933477)
[»] chr1 (10 HSPs)
chr1 (302-386)||(11435311-11435395)
chr1 (302-386)||(28539437-28539520)
chr1 (333-386)||(11434683-11434736)
chr1 (302-386)||(28485814-28485898)
chr1 (302-362)||(3757423-3757483)
chr1 (302-386)||(18169183-18169267)
chr1 (302-386)||(48569389-48569473)
chr1 (302-341)||(3872138-3872177)
chr1 (302-348)||(46923666-46923712)
chr1 (302-375)||(43514892-43514965)
[»] chr7 (5 HSPs)
chr7 (304-386)||(36653215-36653297)
chr7 (302-386)||(23245966-23246050)
chr7 (352-386)||(35595326-35595360)
chr7 (350-386)||(23311089-23311125)
chr7 (302-386)||(47441555-47441639)
[»] chr4 (20 HSPs)
chr4 (302-356)||(26251602-26251656)
chr4 (302-376)||(40361752-40361826)
chr4 (306-386)||(4674942-4675022)
chr4 (322-386)||(53259741-53259805)
chr4 (319-386)||(40361218-40361285)
chr4 (302-386)||(43138839-43138923)
chr4 (302-386)||(51721516-51721599)
chr4 (302-357)||(26973958-26974013)
chr4 (302-386)||(26251386-26251469)
chr4 (302-358)||(26973308-26973364)
chr4 (302-386)||(31825843-31825927)
chr4 (302-341)||(39834811-39834850)
chr4 (319-386)||(42704357-42704424)
chr4 (302-348)||(21713317-21713363)
chr4 (316-386)||(53260279-53260348)
chr4 (302-364)||(54900188-54900250)
chr4 (302-347)||(20394205-20394250)
chr4 (319-384)||(40277158-40277223)
chr4 (419-455)||(40361313-40361349)
chr4 (302-386)||(43501717-43501801)
[»] chr3 (8 HSPs)
chr3 (302-386)||(36754186-36754270)
chr3 (306-386)||(4041100-4041180)
chr3 (310-386)||(53630331-53630407)
chr3 (308-386)||(4040836-4040914)
chr3 (298-380)||(45004492-45004573)
chr3 (302-386)||(25226741-25226825)
chr3 (301-347)||(51147358-51147404)
chr3 (302-347)||(25227392-25227437)
[»] scaffold0012 (1 HSPs)
scaffold0012 (308-386)||(36292-36370)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 6409207 - 6408952
Alignment:
Q  17 acttacaccaaagcaatatgaaaccaatttttgagttgaatttaaaaccataaccacaccccctacaaatcagtttggttatgggaatcagtttaaaaac 116  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6409207 acttacaccaaagcaatatcaaaccaatttttgagttggatttaaaaccataaccacaccccctacaaatcagtttggttatggaaatcagtttaaaaac 6409108  T
Q  117 tannnnnnnnncttccaaaacctggcgtgaacttagtaattgattgttgtaaactactaatttgtacaaaaccaggtttaaaatttccagttttaacact 216  Q
    |          |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6409107 t-tttttttttcttccaaaacctggtgtgaacttagtaattgattgttgtaaactactaatttgtacaaaaccaggtttaaaatttcaagttttaacact 6409009  T
Q  217 gcaaacttcttgtttcttattcgccattcatcttaacaaatgagtatgacagacata 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409008 gcaaacttcttgtttcttattcgccattcatcttaacaaatgagtatgacagacata 6408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 6411954 - 6411726
Alignment:
Q  17 acttacaccaaagcaatatgaaaccaatttttgagttgaatttaaaaccataaccacaccccctacaaa-tcagtttggttatgggaatcagtttaaaaa 115  Q
    ||||||||||||||||||| ||||||| ||  |||||| ||||||| ||||||||| || || || ||| |||| | |||| | ||||||||||||||||    
T  6411954 acttacaccaaagcaatatcaaaccaaatt--gagttggatttaaa-ccataaccaaactccttataaaatcaggt-ggttttaggaatcagtttaaaaa 6411859  T
Q  116 ctannnnnnnnncttccaaaacctggcgtgaacttagtaattgattgttgtaaactactaatttgtacaaaaccaggtttaaaatttccagttttaacac 215  Q
    |||          ||||||| ||||| ||||||||||||| || || |||||| |||| ||| |||||||||||||||||||||| ||||||||||        
T  6411858 ctattttttt---ttccaaagcctggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagtttta---- 6411766  T
Q  216 tgcaaacttcttgtttcttattcgccattcatcttaacaaat 257  Q
      || ||||||||||||||||| ||||  |||||||| ||||    
T  6411765 --catacttcttgtttcttatttgccacccatcttaaaaaat 6411726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 6408546 - 6408623
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacg 379  Q
    ||||| |||||||||| | |||||||||||| ||| |||| |||||| ||||||||| ||||| ||||||||||||||    
T  6408546 aattcagctcttcaccctccacttttcgctcacgctctgcagccatggcgaaaatacccctgcgttagttaactaacg 6408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 507
Target Start/End: Complemental strand, 6408944 - 6408903
Alignment:
Q  466 aattttcatggctataggctataggctttgaatgctatgccg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6408944 aattttcatggctataggctataggctttgaatgctatgccg 6408903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 386
Target Start/End: Original strand, 25868016 - 25868096
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||| || ||||||||||||||||||||||| ||||| || ||||||  ||| |  ||||||||||||||||||||    
T  25868016 ctgctcttccccctgcacttttcgctcgcgccctgcagccatcaccaaaataaccctacgctagttaactaacgcaagtgt 25868096  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 21102373 - 21102290
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtg 385  Q
    |||| ||||||||  | ||||||||||||||||||||||  ||| || | ||||||| | ||| ||||||||||||||||||||    
T  21102373 aattttgctcttccacctgcacttttcgctcgcgccctgtagccttgcccaaaatacccatgcgttagttaactaacgcaagtg 21102290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 16060875 - 16060810
Alignment:
Q  321 cacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||||||||||| |||||||| ||||||| | | || || |||||||| ||||||||    
T  16060875 cacttttcgctcgcgccctgcagccatgaccaaaatacccttacactaattaactaaagcaagtgt 16060810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 7634152 - 7634068
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| ||||||||||| ||| |||||| |||||||||||| |||||| | ||||| | | | | |||||||||||||||| ||||    
T  7634152 aattatgctcttcaccctgctcttttcactcgcgccctgcagccatgtcaaaaatgcccttacgttagttaactaacgcatgtgt 7634068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 9942782 - 9942721
Alignment:
Q  321 cacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaa 382  Q
    |||||||| |||||||||||| |||||| ||||||||| ||||  |||||||| || |||||    
T  9942782 cacttttcactcgcgccctgcagccatgccgaaaatacccctgagttagttaagtagcgcaa 9942721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 43275516 - 43275561
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccat 347  Q
    |||||||||| || || ||||||||||||||||||||||| |||||    
T  43275516 aattctgctcatccccctgcacttttcgctcgcgccctgcagccat 43275561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 34955008 - 34954924
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||||||   ||| |||||||||| || ||| |||||| | ||||| | |||||  |||||||||| |||||||||    
T  34955008 aattctgctcttcacccatcacatttcgctcgcaccttgcagccatgcctaaaatgcccctgcgctagttaactaccgcaagtgt 34954924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 5741601 - 5741517
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||    
T  5741601 aattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgcaagtgt 5741517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 5741179 - 5741263
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||||||| ||||||| ||||| |||||||| |||||||   |||  |||||| |||||||||||||    
T  5741179 aattctgctcttcaccctgcactttttgctcgcgtcctgcagccatgaccaaaataccaatgcgctagttatctaacgcaagtgt 5741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 30746636 - 30746566
Alignment:
Q  316 ccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||||||||  ||||||  || || ||||||| | ||||| |||||||||||||||| ||||    
T  30746636 ccttgcacttttcgctcgtaccctgcaaccttgtcgaaaatgcccctgcgttagttaactaacgcacgtgt 30746566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 1860282 - 1860367
Alignment:
Q  301 aaattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||| ||||||||||| |||||||||| ||||| |||||| || ||| | ||||| | | | | |||||||||||||||| ||||    
T  1860282 aaattttgctcttcaccctgcacttttcactcgcaccctgcagcaatgtcaaaaatgcccttacgttagttaactaacgcatgtgt 1860367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 11600055 - 11599971
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| |||||||||||  |||| |||||||||| |||||| |||||||| ||||| |  ||||  |||||||||| || ||||||    
T  11600055 aattttgctcttcacccagcacatttcgctcgcaccctgcagccatgaccaaaatgcctctgcgctagttaactagcgtaagtgt 11599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 3705 - 3628
Alignment:
Q  309 ctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||    
T  3705 ctcttcacctttcacttttcgctcgcgccctgcagccatgactaaaatactcctgcgttagttaaccaacgcaagtgt 3628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 42882456 - 42882540
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||| |  ||||||||||||||||||||    
T  42882456 aattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgcaagtgt 42882540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 42808721 - 42808624
Alignment:
Q  319 tgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgtnnnnnnntgtgactttgttttttacacatg 416  Q
    ||||| |||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||||       |||||||| |||| |||||||||    
T  42808721 tgcacctttcgctcgcaccctgcagccatgatgaaaatactcctgcgttagttaactaacgcaagtgtaaaaaaatgtgacttagtttcttacacatg 42808624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 42807372 - 42807456
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||| || || || |||||||| |||||||||||  |||| |||||||||||| ||| |||||||||||||||||||||    
T  42807372 aattctgctcctccccctgtacttttcgttcgcgccctgcaaccataacgaaaatactcatgcgttagttaactaacgcaagtgt 42807456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 42807544 - 42807584
Alignment:
Q  435 caccctccgtgagttaactcacgccagttgcaattttcatg 475  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  42807544 caccctgcgtgagttaactcacgccagttgcaattttcatg 42807584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 3815723 - 3815770
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatga 349  Q
    ||||||||||||||||||| |||||||||||||| | ||| |||||||    
T  3815723 aattctgctcttcaccttgtacttttcgctcgcgtcttgcagccatga 3815770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 19005008 - 19004969
Alignment:
Q  347 tgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  19005008 tgaccaaaatactcctgcactagttaactaacgcaagtgt 19004969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 745872 - 745802
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaacta 376  Q
    |||||||||||| |||||||||| || |||| |||| |||||| ||||||| | |||||  ||||||||||    
T  745872 ctgctcttcaccctgcacttttcacttgcgctctgcagccatgccgaaaatgcacctgcgctagttaacta 745802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 5289776 - 5289853
Alignment:
Q  309 ctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||  |||| ||||||||||  |||||  ||||| | ||||||| ||||| ||||||||||| |||||||||    
T  5289776 ctcttcacccagcacatttcgctcgcatcctgcaaccatgcccaaaatacccctgcgttagttaactagcgcaagtgt 5289853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 3816458 - 3816374
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||| |  |||| |||||||| ||||| ||| |||||||  |||||| |  ||| ||| |||||||||||||||||    
T  3816458 aattctgctcttcgctctgcatttttcgcttgcgccttgcagccatgatcaaaatatttatgcgttaattaactaacgcaagtgt 3816374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 9826695 - 9826775
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaa 382  Q
    |||||||||||||| | ||||| |||||||| |||||||| ||| |  | || |||| | ||| |||||||||||||||||    
T  9826695 aattctgctcttcatcctgcacatttcgctcacgccctgcagcccttccaaatatacacttgcgttagttaactaacgcaa 9826775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 38571565 - 38571641
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaa 382  Q
    |||||||||||| |||||||||| |||||||||  | |||||  ||||||||| ||| |  |||||||||| |||||    
T  38571565 ctgctcttcaccatgcacttttcactcgcgcccgacagccataccgaaaatacccctacgctagttaactagcgcaa 38571641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 187544 - 187460
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||  ||| |||||||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||| ||||    
T  187544 aattctgctctctaccatgcacttttcgctcgcgccctgcaaccatgacgaaaatgcccctgcactagttaactaacgcatgtgt 187460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 256392 - 256476
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||| ||| ||||  ||||||| | | || | ||||||| | ||| |||||||||||||||||||||    
T  256392 aattctgctcttcaccctgcacattttgctcaggccctgcaggcgtgcccaaaatacccatgcgttagttaactaacgcaagtgt 256476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 45156515 - 45156435
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||| |||||||||||  |||||||||| |||||||| |||| |||||||| ||||||||||||| |||||||    
T  45156515 ctgctcttcaccctgcacttttcgtccgcgccctgcagccatgaccaaaaaactcctgcgttagttaactaacacaagtgt 45156435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 7130762 - 7130682
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||| ||||||||||||||||||| | |  | ||||| ||||||| ||||  |||||||||||||||||||||    
T  7130762 ctgctcttcaccctgcacttttcgctcgcgccttacaactatgactaaaatacccctgtgttagttaactaacgcaagtgt 7130682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 45155926 - 45155997
Alignment:
Q  307 tgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaac 378  Q
    ||||||||||| ||||||||||||||||||||| | |||||||| ||||||||| |||  || |||||||||    
T  45155926 tgctcttcaccctgcacttttcgctcgcgccctacagccatgaccaaaatactcttgcgctaattaactaac 45155997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 2784958 - 2785011
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaa 355  Q
    ||||||||||||| || ||||||||||||||| ||||||| |||||||||||||    
T  2784958 aattctgctcttctccctgcacttttcgctcgtgccctgcagccatgacgaaaa 2785011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 9512564 - 9512480
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||||||| |||||||| ||||  || ||  |||||||| | ||| |||||||| ||||||||||||    
T  9512564 aattctgctcttcaccctgcactttttgctcgcgctctgcaaccttgctgaaaatacccatgcgttagttaagtaacgcaagtgt 9512480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 39046599 - 39046645
Alignment:
Q  319 tgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgca 365  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  39046599 tgcacttttcgctcgcgtcctgcagccatgacgaaaatacccctgca 39046645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 386
Target Start/End: Complemental strand, 36933477 - 36933395
Alignment:
Q  304 ttctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||| || || |||||||| ||||||||||| |||||  | |||||||   |||  ||||||||||||||||||||    
T  36933477 ttctgctcttccccatgtacttttcgttcgcgccctgcagccattcctaaaatacctttgcgctagttaactaacgcaagtgt 36933395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 11435395 - 11435311
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| |||||||||| ||||||||||||  ||||||| ||||||||| | |  ||||||||||||||||||||    
T  11435395 aattctgctcttcaccctgcacttttcactcgcgccctgcaaccatgaccaaaatactcatacgctagttaactaacgcaagtgt 11435311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 28539437 - 28539520
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| |||||||| ||| |||||||||||||||||||||| ||| || | ||||||| | ||||||||| |||||||||||||||    
T  28539437 aattttgctcttcccct-gcacttttcgctcgcgccctgcagccttgcctaaaatacccatgcattagtaaactaacgcaagtgt 28539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 11434683 - 11434736
Alignment:
Q  333 gcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||| |||||||| |||||||||||||  ||||||||||||||||||||    
T  11434683 gcgccctgcagccatgaccaaaatactcctgcgctagttaactaacgcaagtgt 11434736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 28485814 - 28485898
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||| || ||||||||||||||||| ||||| |||||  | ||||| ||| | | |||||||||||| ||||||||    
T  28485814 aattctgctcttccccctgcacttttcgctcgcgacctgcagccatcccaaaaatgctcttacgttagttaactaatgcaagtgt 28485898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 3757423 - 3757483
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcct 362  Q
    |||| ||||||||  | |||||||||||||||||||||||  |||||||||||||| ||||    
T  3757423 aattttgctcttcctcctgcacttttcgctcgcgccctgcaaccatgacgaaaatattcct 3757483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 18169183 - 18169267
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||| ||| |||||| |||||| |||||| | ||||||||| |||   |||||||||  ||||||||    
T  18169183 aattctgctcttcaccctgcacattttgctcgcaccctgcagccatgccaaaaatactcttgcgcaagttaactagtgcaagtgt 18169267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 48569473 - 48569389
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||| ||| ||||||||||||| |||||| | ||||| | | |||  |||||||||  |||||||||    
T  48569473 aattctgctcttcaccctgcacattttgctcgcgccctgctgccatgccaaaaatgcccttgcgctagttaacttgcgcaagtgt 48569389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 3872138 - 3872177
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgc 341  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  3872138 aattctgctcttccccctgcacttttcgctcgcgccctgc 3872177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 46923666 - 46923712
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatg 348  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||||    
T  46923666 aattctgctcttcaccctgcacattttgctcgcgccctgcagccatg 46923712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 43514965 - 43514892
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaact 375  Q
    |||| |||||||||||  |||||||||||||||||||||| | |||  | |||||||  ||||| |||||||||    
T  43514965 aattatgctcttcacccagcacttttcgctcgcgccctgcagtcattccaaaaatacctctgcactagttaact 43514892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 36653215 - 36653297
Alignment:
Q  304 ttctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||||| |||| |||||||||||| || | |||||   |||||||| ||||| |||||||||||||||||||||    
T  36653215 ttctgctcttcacctagcacatttcgctcgcgctctacagccattttgaaaatacgcctgcgttagttaactaacgcaagtgt 36653297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 23246050 - 23245966
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||| |  |||||||||||||||| |||||| |||||  | ||||| | | |||| ||||||||||||| ||||||    
T  23246050 aattctgctcttcccactgcacttttcgctcgcaccctgcagccattccaaaaatgcccttgcactagttaactaacgtaagtgt 23245966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 35595360 - 35595326
Alignment:
Q  352 aaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||| |||||||||||||||||||||||||||    
T  35595360 aaaatacccctgcattagttaactaacgcaagtgt 35595326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 23311125 - 23311089
Alignment:
Q  350 cgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  23311125 cgaaaatacccctgcgttagttaactaacgcaagtgt 23311089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 47441555 - 47441639
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| ||||||||||| ||||||||| ||||||| ||||  ||| || | ||||| |  |||| |||||||| ||||||||||||    
T  47441555 aattatgctcttcaccctgcactttttgctcgcgtcctgtagccttgccaaaaatgcctctgcgttagttaagtaacgcaagtgt 47441639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 26251656 - 26251602
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaat 356  Q
    |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  26251656 aattctgctcttcaccttgcacttttcgatcgcgccctgcagtcatgacgaaaat 26251602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 40361826 - 40361752
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaacta 376  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||  |||||  ||||||||||    
T  40361826 aattcttctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatatccctgcgctagttaacta 40361752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 386
Target Start/End: Original strand, 4674942 - 4675022
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||| ||||||||||||||||||||||| | |||||| ||||||| | ||   ||||||||||| ||||||||    
T  4674942 ctgctcttcaccctgcacttttcgctcgcgccctgcagtcatgaccaaaatacccatgtgctagttaactaatgcaagtgt 4675022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 53259741 - 53259805
Alignment:
Q  322 acttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||| ||||| ||||| || ||||||||||||||||||| |||||||| ||||||||||||    
T  53259741 acttttcgttcgcgtcctgcagctatgacgaaaatactcctgcgttagttaattaacgcaagtgt 53259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 40361218 - 40361285
Alignment:
Q  319 tgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||||||||  ||| |||||||||||||||| ||||| ||| |||||||||||| ||||    
T  40361218 tgcacttttcgctcgcgctttgcagccatgacgaaaatacccctgcgttaattaactaacgcatgtgt 40361285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 43138839 - 43138923
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||| || || ||||||||||| |||||||| ||| |||||||||| | | ||| |||||||| | ||||||||||    
T  43138839 aattctgctcttctccgtgtacttttcgctcacgccctgcagccttgacgaaaatgcccatgcgttagttaagtgacgcaagtgt 43138923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 51721599 - 51721516
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| ||||||||||||  ||||||||||||||||||||| || |||   ||||| ||| ||| |||||||||||||||||||||    
T  51721599 aattttgctcttcaccta-cacttttcgctcgcgccctgcagctatgttcaaaatgctcttgcgttagttaactaacgcaagtgt 51721516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 26974013 - 26973958
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaata 357  Q
    ||||||||||||| || |||||||||||||| |||||||| | |||||||||||||    
T  26974013 aattctgctcttctccctgcacttttcgctcacgccctgcagtcatgacgaaaata 26973958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 26251386 - 26251469
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||| | |||| |||||||||||||||||||||  ||||||  ||||| ||| |||  ||||||||||||||| ||||    
T  26251386 aattctgctctccccctt-cacttttcgctcgcgccctgcatccatgataaaaatgctcttgcgctagttaactaacgcatgtgt 26251469  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 26973308 - 26973364
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatac 358  Q
    |||| ||||||||||| ||||||||||||||||  |||||  |||||||||||||||    
T  26973308 aattttgctcttcaccctgcacttttcgctcgcatcctgcaaccatgacgaaaatac 26973364  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 31825927 - 31825843
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||||| ||||| ||| ||||||||||||| |||||| | ||||| | | |||  |||||||||  |||||||||    
T  31825927 aattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaacttgcgcaagtgt 31825843  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 39834850 - 39834811
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgc 341  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  39834850 aattctgctcttccccctgcacttttcgctcgcgccctgc 39834811  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 42704357 - 42704424
Alignment:
Q  319 tgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||||||||||||||| | | || | ||||||| | ||| |||| ||||||||||||||||    
T  42704357 tgcacttttcgctcgcgccctgcaggcttgcccaaaatacccatgcgttagctaactaacgcaagtgt 42704424  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 21713363 - 21713317
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatg 348  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||||    
T  21713363 aattctgctcttcaccctgcacattttgctcgcgccctgcagccatg 21713317  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 53260348 - 53260279
Alignment:
Q  316 ccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||| |||||||||||| ||||| ||||||||||||||| |  | |||||||||| ||| ||||||||    
T  53260348 ccttgcatttttcgctcgcgtcctgcagccatgacgaaaata-ttttacattagttaattaatgcaagtgt 53260279  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 54900188 - 54900250
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgc 364  Q
    ||||||||||| | || |||| |||||||| ||||||||| ||||||||||||| || |||||    
T  54900188 aattctgctctcccccatgcatttttcgcttgcgccctgcagccatgacgaaaaaacccctgc 54900250  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 20394250 - 20394205
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccat 347  Q
    |||| |||||||| || ||||||||||||||||||||||| |||||    
T  20394250 aattttgctcttccccctgcacttttcgctcgcgccctgcagccat 20394205  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 40277223 - 40277158
Alignment:
Q  319 tgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagt 384  Q
    ||||||||| |||||||| ||||  |||||||||||||||  || | ||| |||||||||||||||    
T  40277223 tgcactttttgctcgcgctctgcaaccatgacgaaaatacctctacgttaattaactaacgcaagt 40277158  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 40361313 - 40361349
Alignment:
Q  419 catgagttaactcacgcaccctccgtgagttaactca 455  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  40361313 catgagttaactcatgcaccctgcgtgagttaactca 40361349  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 43501717 - 43501801
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| |||||||||||  |||| |||||||||| ||||||  ||||| | ||||| | |||||  |||||||||| |||||||||    
T  43501717 aattttgctcttcacccagcacatttcgctcgcaccctgcaaccatgtccaaaatgcccctgcgctagttaactagcgcaagtgt 43501801  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 36754270 - 36754186
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||||||| | |||||||||||||| |||| |||  | | ||| ||||||| ||||| |||||||||||||||||||||    
T  36754270 aattctgctcttcatcctgcacttttcgctcacgccttgcaactacgaccaaaatacccctgcgttagttaactaacgcaagtgt 36754186  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 4041180 - 4041100
Alignment:
Q  306 ctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||| |||| ||||||||||||||| ||||||| | |||||| ||||||| | ||   ||||||||||||||||||||    
T  4041180 ctgctctccaccctgcacttttcgctcgtgccctgcagtcatgaccaaaatacccatgtgctagttaactaacgcaagtgt 4041100  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 53630407 - 53630331
Alignment:
Q  310 tcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||| |||||||||||||||||||||||||| | | || | ||||| | | ||| |||||||||||||||||||||    
T  53630407 tcttccccttgcacttttcgctcgcgccctgcaggcttgtccaaaattcccatgcgttagttaactaacgcaagtgt 53630331  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 4040836 - 4040914
Alignment:
Q  308 gctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||||||||| |||| ||||| || ||||||||| |||||||| ||||||  |||||  || |||||||||||||||||    
T  4040836 gctcttcaccctgcatttttcacttgcgccctgcagccatgaccaaaatatccctgcgctaattaactaacgcaagtgt 4040914  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 45004573 - 45004492
Alignment:
Q  298 taaaaattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgc 380  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||| ||| ||   ||||||| ||| | |||||||||||||||    
T  45004573 taaaaattctgctcttctcct-gcacttttcgctcgcgctctgcagccttgctcaaaatacccctacgttagttaactaacgc 45004492  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 25226741 - 25226825
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    |||| |||||||| || ||||||| |||||| |||||||| |||||  |||||||  || | | |||||||||||||||||||||    
T  25226741 aattatgctcttccccctgcacttgtcgctcacgccctgcagccatcccgaaaatgttcttacgttagttaactaacgcaagtgt 25226825  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 51147358 - 51147404
Alignment:
Q  301 aaattctgctcttcaccttgcacttttcgctcgcgccctgccgccat 347  Q
    |||||||||||||  || ||||||||||||||||||||||| |||||    
T  51147358 aaattctgctctttcccctgcacttttcgctcgcgccctgcagccat 51147404  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 25227437 - 25227392
Alignment:
Q  302 aattctgctcttcaccttgcacttttcgctcgcgccctgccgccat 347  Q
    ||||||||||||| || ||||||||||||||||| ||||| |||||    
T  25227437 aattctgctcttccccctgcacttttcgctcgcgtcctgcagccat 25227392  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 36370 - 36292
Alignment:
Q  308 gctcttcaccttgcacttttcgctcgcgccctgccgccatgacgaaaatactcctgcattagttaactaacgcaagtgt 386  Q
    ||||||||||  ||||||||| |||||| ||||| |||||  | ||||| | | ||| |||||||||||||||||||||    
T  36370 gctcttcacccagcacttttcactcgcgtcctgcagccatcccaaaaatgcccttgcgttagttaactaacgcaagtgt 36292  T

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