View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_18 (Length: 494)
Name: NF17168_low_18
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 193 - 483
Target Start/End: Complemental strand, 20643388 - 20643098
Alignment:
| Q |
193 |
ttttaagtctcacttatcatcaagcattaaatgcaaagcaaacctgctgtcataatggcaaataattcaacattctatgcgataataggaattattatat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20643388 |
ttttaagtctcacttatcatcaagcattaaatgcaaagcaaacctgctgtcataatggcaaataattcaacattctatgcgataataggaattattatat |
20643289 |
T |
|
| Q |
293 |
agtttgatgcaatgttttcacatcttgtgctatcgatgatgtcgttacaagccatgtcttgagaggtgcaatgagtttgaaagatatcatatcctagcca |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20643288 |
agtttgatgcaatgttttcacatcttgtgctatcgatgatgtcgttacaagccatgtcttgagaggtgcaatgagtttgaaagatatcatatcctagcca |
20643189 |
T |
|
| Q |
393 |
tggttcttctttgactgctgttgtttgcaagcnnnnnnnaacctcccaagatttaccatatccagcaagaatatattctttatcatatatt |
483 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||| |
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| T |
20643188 |
tggttcttctttggctgctgttgtttgcaagctttttttaacctcccaagatttaccatattcaacaagaatatattcttcatcatatatt |
20643098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 20643539 - 20643402
Alignment:
| Q |
17 |
actcaccacaaatgtagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtttatagagatatgtttgaaagttgaaaagtg |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20643539 |
actcaccacaaatgcagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtttatagagatatgtttgaaagttgaaaagtg |
20643440 |
T |
|
| Q |
117 |
tttttactttatgttagtctgcatttgcattcctttgc |
154 |
Q |
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| T |
20643439 |
tttttactttatgttagtctgcatttgcattcctttgc |
20643402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 33246915 - 33246640
Alignment:
| Q |
17 |
actcaccacaaatgtagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtttatagagatatgtttgaaagttgaaaagtg |
116 |
Q |
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|||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33246915 |
actcaccacagttgcagctggacaccaatgcttcaaatcaaggcgtcttccactatttatggagattgtttatagagatatgtttgaaagttgaaaagtg |
33246816 |
T |
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| Q |
117 |
tttttactttatgttagtctgcatttgcattcctttgcagctgtatagtgcttaatttcctgagnnnnnnnntagattttaagtctcacttatcatcaag |
216 |
Q |
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| T |
33246815 |
tctttactttatgttagtctgcatttgcattcatttccggttgtatagtgcttaatttactga-aaaacaaatagcttttaagtctcacttatcatcaag |
33246717 |
T |
|
| Q |
217 |
cattaaatgcaaagcaaacctgctgtcataatggcaaataattcaacattctatgcgataataggaattattatata |
293 |
Q |
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||||||||||||||||||||||||| || |||| |||||||||||||||||| | ||||||||||||||||||||| |
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| T |
33246716 |
cattaaatgcaaagcaaacctgctgacacaatgacaaataattcaacattctctcggataataggaattattatata |
33246640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 292 - 483
Target Start/End: Complemental strand, 33246358 - 33246167
Alignment:
| Q |
292 |
tagtttgatgcaatgttttcacatcttgtgctatcgatgatgtcgttacaagccatgtcttgagaggtgcaatgagtttgaaagatatcatatcctagcc |
391 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33246358 |
tagtttgatgcaatgttttcacatattgtgctatcgatgatgtcgttacaagccatgtcttgagaggtgcaatgagtttgaaaaatatcatatcctagcc |
33246259 |
T |
|
| Q |
392 |
atggttcttctttgactgctgttgtttgcaagcnnnnnnnaacctcccaagatttaccatatccagcaagaatatattctttatcatatatt |
483 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
33246258 |
atggttcttctttggttgctgttgtttgcaagctttttttaacctctcaagatttaccatattcagcaagaatatattcttcgtcatatatt |
33246167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 42469339 - 42469403
Alignment:
| Q |
288 |
tatatagtttgatgcaatgttttcacatcttgtgctatcgatgatgtcgttacaagccatgtctt |
352 |
Q |
| |
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||||||||||||||||| |||||||| ||| || ||||||||||| | ||| || ||||||||| |
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| T |
42469339 |
tatatagtttgatgcaacgttttcaccacttttgttatcgatgatgacattaaaaaccatgtctt |
42469403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 29373037 - 29373196
Alignment:
| Q |
20 |
caccacaaatgtagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtt--tatagagatatgttt--gaaagttgaaaagt |
115 |
Q |
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|
||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| | | |||||||||||| |
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| T |
29373037 |
caccacaaatgcagttggacagcaatgcttcaaagcaaggcgtcatccattatttatggagattgtttatatagagatatgtctccggaagttgaaaagt |
29373136 |
T |
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| Q |
116 |
g-tttttactttatgttagtctgcatttgcattcctttgcagctgtatagtgcttaattt |
174 |
Q |
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| T |
29373137 |
gttttttactttatgttaggctgcatttgcattcctttctaactgtaaaatgcttaattt |
29373196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 21767740 - 21767819
Alignment:
| Q |
288 |
tatatagtttgatgcaatgttttcacatcttgtgctatcgatgatgtcgttacaagccatgtcttgagaggtgcaatgag |
367 |
Q |
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||||||||||||||||| |||||||||||| || ||| || ||| | |||||| |||||||||| ||||||||||||| |
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| T |
21767740 |
tatatagtttgatgcaacattttcacatcttttgttattgacaatgacattacaaaccatgtcttgtgaggtgcaatgag |
21767819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 483
Target Start/End: Complemental strand, 19788316 - 19788221
Alignment:
| Q |
388 |
agccatggttcttctttgactgctgttgtttgcaagcnnnnnnnaacctcccaagatttaccatatccagcaagaatatattctttatcatatatt |
483 |
Q |
| |
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|||||| || |||||||| || |||||||||||||| ||||||| |||||| ||||||| ||||||||| |||||||| |||||||||| |
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| T |
19788316 |
agccatagtccttctttggatgttgttgtttgcaagcttcttttaacctccaaagattcaccatattcagcaagaacatattcttcatcatatatt |
19788221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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