View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_19 (Length: 491)
Name: NF17168_low_19
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_19 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 24257872 - 24258099
Alignment:
| Q |
12 |
atagggaattcgaattggtttccttcaaaattgagatattcaagtgaagtaagacttgcaagggtagggccaatattaccaataaagtgattattagtga |
111 |
Q |
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| T |
24257872 |
atagggaattcgaattggtttccttcaaaattcagatattcaagggaagtaaaacttgcaaggttaggaccaatattaccaataaagtgattattagaaa |
24257971 |
T |
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| Q |
112 |
gtgtcaaagtttgaagtgatgtcaggttgaaaaatgatgaggggagttttccctcaaattcattgtgggatagatctaactcttccaactttttaagctt |
211 |
Q |
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| T |
24257972 |
ggttcaaggtaagaagtgatgtcatgttgaaaaaagatgaggggagtttccccacaaattcattgcctgatagatctaactcttccaacttcttaagctt |
24258071 |
T |
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| Q |
212 |
agaccaatctgaaaaataaaagtttgac |
239 |
Q |
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| T |
24258072 |
cgaccaatctgaaaaataaaagtttgac |
24258099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 24243114 - 24243340
Alignment:
| Q |
12 |
atagggaattcgaattggtttccttcaaaattgagatattcaagtgaagtaagacttgcaagggtagggccaatattaccaataaagtgattattagtga |
111 |
Q |
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| T |
24243114 |
atagggaattcaaattggtttccttcaaatttaagatattcaagggaagcaagacttgcaaggttaggaccaatattaccaataaagtgattattagcaa |
24243213 |
T |
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| Q |
112 |
gtgtcaaagtttgaagtgatgtcaggttgaaaaatgatgaggggagttttccctcaaattcattgtgggatagatctaactcttccaactttttaagctt |
211 |
Q |
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| T |
24243214 |
gtgtcaaagaccgaagcgaagtcatgttaacaaacgatgaagggagtttccccacaaattcattgttggatagatctaactcttccaaattcttaagctt |
24243313 |
T |
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| Q |
212 |
agaccaatctgaaaaataaaagtttga |
238 |
Q |
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| T |
24243314 |
agaccaatctgaaaaatgaaattttga |
24243340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 406 - 477
Target Start/End: Original strand, 24259970 - 24260041
Alignment:
| Q |
406 |
tactcaccaccaatatcaagagatcctttcaagttgttgtaacttaagtcaagagatttgagatgtggaaga |
477 |
Q |
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| T |
24259970 |
tactcaccactaatatcaagcgatccattcaagttgttgtaacttaagtcaagagatttgagacgtggaaga |
24260041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0474 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 407 - 478
Target Start/End: Original strand, 8436 - 8507
Alignment:
| Q |
407 |
actcaccaccaatatcaagagatcctttcaagttgttgtaacttaagtcaagagatttgagatgtggaagat |
478 |
Q |
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| T |
8436 |
actcaccactaatatcaagtgatcctttcaagttgttggcacttaagtcaagagatttcagatgtggaagat |
8507 |
T |
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