View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_21 (Length: 481)
Name: NF17168_low_21
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 3308156 - 3308611
Alignment:
| Q |
10 |
atgaatgaggaaaggagttcacggaagaagaaagtgaatgaggaaaagaatttatggagaagaatcaaacttgaaaacttgtaggactacctaaggatca |
109 |
Q |
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| T |
3308156 |
atgaatgaggaaaagagttcacggaagaagaaagtgaatgaggaaaagaattcatggagaagaatcaaacttgaaaacttgtgggactacctaaggatca |
3308255 |
T |
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| Q |
110 |
aagggtagttggatggaagtggaggtcgatgcctataacagggttcaagaatttcttggacttgatcagttttgctgaagagtaattcgagcactcaaga |
209 |
Q |
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| T |
3308256 |
aagggtagttggatggaagtggaggtcgatgcctataacagggttcaagaatttctcggacttgatcagttttgctgaagagtaatttcggcactcaaga |
3308355 |
T |
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| Q |
210 |
gagcaacaagtggttgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaattatagcgagtatgtcttcaaatatgtgtttttagc |
309 |
Q |
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| T |
3308356 |
gagcaacaagtggttgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaattatggcgagtatgtcttcaaatatgtgtttttagc |
3308455 |
T |
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| Q |
310 |
ttctagaggtgacgatttaaatcatggtaattggggtgaaaggttgattcgaaccttggtggtgaaaatgggttcaagtcac-tgtttttcttggttgat |
408 |
Q |
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| T |
3308456 |
ttctagaggtgatgatttaaatcaaggtaattggggtgaaaggttgattcgagccttggtggtgaaaatgggttcaagtcacttttttttcttggttgat |
3308555 |
T |
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| Q |
409 |
tcgaatcaggggtagcatgattcaaattggatatttgctctctcccgcaaacaaat |
464 |
Q |
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| T |
3308556 |
tcgaatcaggggtagcatgattcaaatttgatatttgctctctcccgcaaataaat |
3308611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
151 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
197 |
Q |
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| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 16257364 - 16257296
Alignment:
| Q |
64 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
132 |
Q |
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| T |
16257364 |
tggaaaagaaccaaacttggaaacttgtaaagctacctaaacaccaaagggtagttggatgcaagtgga |
16257296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 16626784 - 16626852
Alignment:
| Q |
64 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
132 |
Q |
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| T |
16626784 |
tggaaaagaaccaaacttgaaaacttgtgaagctacctaaacaccaaagggtagttggatgcaagtgga |
16626852 |
T |
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