View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_22 (Length: 477)
Name: NF17168_low_22
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 47014743 - 47015179
Alignment:
| Q |
1 |
cgtcgatggaaaaccgtggtgccatcatcagggaacgcaacactggcctaaaccactaggcaatctcagattcggtggcttacaattgtggtgggaggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47014743 |
cgtcgatggaaaaccgtggtgccatcatcagggaacacaacactgacctaaaccactaggcaatctcagatgcggtggcttacaattgtggtgggaggca |
47014842 |
T |
|
| Q |
101 |
tatctctcccagtattgaagttaaaggctaacagtttggctggacaaatagaaacaaaggagatacgacacgatgtggttggtcgcagatttgttgaaag |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014843 |
tatctctatcagtattgaagttaaaggctaacagtttggctggacaaatagaaacaaaggagatacgacacgatgtggttggtcgcagatttgttgaaag |
47014942 |
T |
|
| Q |
201 |
ccttgtcctctttgtttgattaaatatttgggcactatgaaaaggggctaataacagtatggtcaacattatatgagattgaatcaccaacacatgtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47014943 |
ccttgtcctctttgtttgattaaatatttgggcactatgaaaaggggctaataacagtatggtcaacattatatgagattgaatcaccaacacatgtgat |
47015042 |
T |
|
| Q |
301 |
gaggtcagttggatgattgaactatcaaatacaggaagaagatcttgatggcgatgagtttgttctgctatcagaattcaactggcttgtgatgggaggc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47015043 |
gaggtcagttggatgattgaactatcaaatacaggaagaagatcttgatggcggtgagtttgttccgctatcagaattcaactggcttgtgatgggaggc |
47015142 |
T |
|
| Q |
401 |
gcaatatgtgtctcatatttcagaagcaatgttttat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47015143 |
gcaatatgtgtctcatatttcagaagcaatgttttat |
47015179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University