View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_23 (Length: 475)
Name: NF17168_low_23
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Original strand, 45457405 - 45457849
Alignment:
| Q |
11 |
atgaaatgaggggatgaattataa---taataataataagctgtccgtccacagtgacagatcaaggagatacaatataattgattcacattaacgtgaa |
107 |
Q |
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| T |
45457405 |
atgaaatgaggggatgaattataataataataataataagctgtccgtccacagtgacagatcaaggtgatacaatataattgattcacattaacgtgaa |
45457504 |
T |
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| Q |
108 |
gatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgttgatattgatatcatcatattcatac |
207 |
Q |
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| T |
45457505 |
gatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgttgatattgatatcatcatattcatac |
45457604 |
T |
|
| Q |
208 |
gtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctatgactctatagagaaaaagaaagaattaatacaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45457605 |
gtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctctgactctatagagaaaaagaaagaattaatacaag |
45457704 |
T |
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| Q |
308 |
tgtgtgatcagatcatcttttcttctcttcttattaattacagtacttagtatgctccgtccgtccatagaatttgaacaagcacaagcattgtcttaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45457705 |
tgtgtgatcagatcatcttttcttctcttcttattaattacagtacttagtatgctccgtccgtccatagaatttgaacaagcacaagcattgtcttaat |
45457804 |
T |
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| Q |
408 |
cgcttattcttccaaatacttgtttgtattcattcattcatccta |
452 |
Q |
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| T |
45457805 |
cgcttattcttccaaatacttgtttgtattcattcattcatccta |
45457849 |
T |
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