View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_24 (Length: 453)
Name: NF17168_low_24
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_24 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 6249103 - 6249542
Alignment:
| Q |
1 |
aatcatgtgatccatctccttcatttcatttcatctatattctccttttaattttgaaggcttagcttccattgttgtctatgtaaaacagagaattcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249103 |
aatcatgtgatccatctccttcatttcatttcatctatattctccctttaattttgaaggcttagcttccattgttgtctatgtaaaacagagaattcca |
6249202 |
T |
|
| Q |
101 |
tcaatttcaaatgccactgtcttagatctatgcaagatcttctactcgatatgtacaacaaagaagaagaaaccaaacaatttatgatttcttctgtccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
6249203 |
tcaatttcaaatgccactgtcttagatctatgcaagatcttctactcgatatgtacaacaaagaagaagaaaccaaacaattcatgatttcttatgtccg |
6249302 |
T |
|
| Q |
201 |
gatcttccaaaaagtgttaccttcaattcaataaaaattagagttgctggaaaaatcactgaaggtttctctgcatctgacccgcgttaacccaacccgt |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6249303 |
gatcttccaaaaagtgttaccttcacttcaataaaaattagagttgctggaaaaatcactgaaggtttctctgcatctaacccgcgttaacccaacccgt |
6249402 |
T |
|
| Q |
301 |
gaaccgtacgacccgtaacccgctgaacccgcaacaaaaaaggggttgaaatgggcttctgtaggacacccgcgggttgggcagggttggtgttttgagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249403 |
gaaccgtacgacccgtaacccgctgaacccgcaacaaaaaaggggttgaaatgggcttctgtaggacacccgcgggttgggcagggttggtgttttgagc |
6249502 |
T |
|
| Q |
401 |
ccgaacccgcccgacgcccacccctagacacatccctttg |
440 |
Q |
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| T |
6249503 |
ccgaacccgcccgacgcccacccctagacacatccctttg |
6249542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 43064364 - 43064315
Alignment:
| Q |
365 |
gacacccgcgggttgggcagggttggtgttttgagcccgaacccgcccga |
414 |
Q |
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| T |
43064364 |
gacacccgcgagttgggctggattggggttttgggcccgaacccgcccga |
43064315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 43047259 - 43047684
Alignment:
| Q |
1 |
aatcatgtgatccatctccttcatttcatttcatctatattctccttttaattttgaaggcttagcttccattgttgtctatgtaaaacagagaattcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43047259 |
aatcatgtgatccatctccttcatttcatttcatccatattctccttttaattttgaaggcttagcttccattgttgtctatgtaaaacagagaattcca |
43047358 |
T |
|
| Q |
101 |
tcaatttcaaatgccactgtcttagatctatgcaagatcttctactcgatatgtacaacaaagaagaagaaaccaaacaatttatgatttcttctgtccg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43047359 |
tcagtttcaaatgccactgtcttagatctatgcaagatcttctactcgatatgtacaacaaagaagaagaaaccaaacaattcatgatttcttctgtccg |
43047458 |
T |
|
| Q |
201 |
gatcttccaaaaagtgttaccttcaattcaataaaaattagagttgctggaaaaatcactgaaggtttctctgcatctgacccgcgttaacccaacccgt |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43047459 |
gatcttccaaaaagtgttaccttcacttcaataaaaattagagttgctggaaaaatcaccgaaggtttctctgcatctgacccgcgttaacccaacccgt |
43047558 |
T |
|
| Q |
301 |
gaaccgtacgacccgtaacccgctgaacccgcaacaaaaaaggggttgaaatgggcttctgtaggacacccgcgggttgggcagggttggtgttttgagc |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
43047559 |
gaaccgtacgacccgtaacccgctggacccgcaacaaaaaaggggttgaaatgggcttatgtaggacacccgcgggttgggctaggttggtgttttgagc |
43047658 |
T |
|
| Q |
401 |
ccgaacccgcccgacgcccaccccta |
426 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43047659 |
ccgaacccgcccgacgcccaccccta |
43047684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 41120828 - 41120884
Alignment:
| Q |
370 |
ccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccaccccta |
426 |
Q |
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||||||||||||| |||| |||| |||| ||||||||||||||| | ||||||||| |
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| T |
41120828 |
ccgcgggttgggctgggtgggtgctttggacccgaacccgcccgatgtccaccccta |
41120884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 102321 - 102265
Alignment:
| Q |
370 |
ccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccaccccta |
426 |
Q |
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||||||||||||| |||| |||| |||| ||||||||||||||| | ||||||||| |
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| T |
102321 |
ccgcgggttgggctgggtgggtgctttggacccgaacccgcccgatgtccaccccta |
102265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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