View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_25 (Length: 450)
Name: NF17168_low_25
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 36738549 - 36738385
Alignment:
| Q |
11 |
agaatatgaagcttctactaatgcagaggcgccgaactaatgaggggtattttgatatttaactagtgtattttagtctactttattgtgtcaagcaatt |
110 |
Q |
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| T |
36738549 |
agaaaatgaagcttctaccaatgcagaggtgccgaactgatgaggggtattttgatatttaactagtgtattttagtattctttattgtgtcaagcaatt |
36738450 |
T |
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| Q |
111 |
ttctacaaaataaccataatatagagttgtacggtgggtgtgagttttagaaaagataacattac |
175 |
Q |
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| T |
36738449 |
ttctacaaaataaccataatatagagttgtacggtgggtgtgagttttagaaaagataacattac |
36738385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 36738292 - 36738192
Alignment:
| Q |
178 |
cgcagcttctacattttcatttttacattttccattctagcggaagagtcatggcatctttaagtggagcagtaggttcgtattcaaaccatataaacgt |
277 |
Q |
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| T |
36738292 |
cgcagcttctacattttcatttttacattttccattctagcgaaagagtcatgacatcttcaagtggtgcagtaggttcgtattcaaaccatataaacgt |
36738193 |
T |
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| Q |
278 |
c |
278 |
Q |
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| T |
36738192 |
c |
36738192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 36739847 - 36739803
Alignment:
| Q |
388 |
aaattttgcaccacagcatcccaggctccaaaacccgtcaacaat |
432 |
Q |
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| T |
36739847 |
aaattttgcaccacagcatcccagactccaaaatccgtcaacaat |
36739803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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