View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_26 (Length: 448)
Name: NF17168_low_26
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_26 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Complemental strand, 10868060 - 10867644
Alignment:
| Q |
12 |
agagacataactcaacaatagtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacacccaaaactaacaaagtaattaacaactacaa |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
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|
| T |
10868060 |
agagacataactctacaatagtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaa |
10867961 |
T |
|
| Q |
112 |
ggaatgaatattgatcatgatgataagtccaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagcaactttggtga |
211 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867960 |
gcaatgaatattgatcatgatgataagtacaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagcaactttggtga |
10867861 |
T |
|
| Q |
212 |
catctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867860 |
catctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagc |
10867761 |
T |
|
| Q |
312 |
tactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867760 |
tactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgt |
10867661 |
T |
|
| Q |
412 |
gtgccccctcctactgt |
428 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
10867660 |
gtgccccctcctactgt |
10867644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 10886309 - 10886728
Alignment:
| Q |
12 |
agagacataactcaacaatagtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacacccaaaactaacaaagtaattaacaactacaa |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
10886309 |
agagacataactctacaatagtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaaataaaactaacaaagtaattaacaaatacaa |
10886408 |
T |
|
| Q |
112 |
ggaatgaatattgatcatgatgataagtccaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagcaactttggtga |
211 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
10886409 |
gcaatgaatattgatcatgatggtaagtacaagattatttatctcgcacttgtggtatctacatataacctatgtacaactcatgaagcaactttggtga |
10886508 |
T |
|
| Q |
212 |
catctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886509 |
catctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagc |
10886608 |
T |
|
| Q |
312 |
tactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886609 |
tactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgt |
10886708 |
T |
|
| Q |
412 |
gtgccccctcctactgtacc |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10886709 |
gtgccccctcctactgtacc |
10886728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 191 - 428
Target Start/End: Original strand, 10872431 - 10872668
Alignment:
| Q |
191 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
10872431 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10872530 |
T |
|
| Q |
291 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872531 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10872630 |
T |
|
| Q |
391 |
gctgattgcgacgcaagttgtgtgccccctcctactgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872631 |
gctgattgcgacgcaagttgtgtgccccctcctactgt |
10872668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 191 - 428
Target Start/End: Original strand, 10877502 - 10877739
Alignment:
| Q |
191 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877502 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10877601 |
T |
|
| Q |
291 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877602 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10877701 |
T |
|
| Q |
391 |
gctgattgcgacgcaagttgtgtgccccctcctactgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877702 |
gctgattgcgacgcaagttgtgtgccccctcctactgt |
10877739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 191 - 428
Target Start/End: Original strand, 10882573 - 10882810
Alignment:
| Q |
191 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882573 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10882672 |
T |
|
| Q |
291 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882673 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10882772 |
T |
|
| Q |
391 |
gctgattgcgacgcaagttgtgtgccccctcctactgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882773 |
gctgattgcgacgcaagttgtgtgccccctcctactgt |
10882810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 191 - 431
Target Start/End: Complemental strand, 39677575 - 39677335
Alignment:
| Q |
191 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
39677575 |
ctcatgaagcaactttggtgacatctttattagatctgttgtatttcatgtggcttttaacaagttgaccagctgcaattgcagacatgagtgaaagctc |
39677476 |
T |
|
| Q |
291 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
39677475 |
tcctgcaaggactgaaccagctactatagttgccaattgcctagagtttgctcctggactctctttactagctcccttaactccaagtaaattaagacaa |
39677376 |
T |
|
| Q |
391 |
gctgattgcgacgcaagttgtgtgccccctcctactgtacc |
431 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
39677375 |
gctgattgagatgcaagttgtgtaccccctccaactgtacc |
39677335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 191 - 431
Target Start/End: Complemental strand, 10048529 - 10048289
Alignment:
| Q |
191 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
290 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |
|
|
| T |
10048529 |
ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagttc |
10048430 |
T |
|
| Q |
291 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
390 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |||| |
|
|
| T |
10048429 |
tcctgcaagaactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaa |
10048330 |
T |
|
| Q |
391 |
gctgattgcgacgcaagttgtgtgccccctcctactgtacc |
431 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| |||||||| |
|
|
| T |
10048329 |
gctgattgtgatgcaagctgtgtgcctcctccaactgtacc |
10048289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 37950744 - 37950688
Alignment:
| Q |
222 |
tgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacat |
278 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
37950744 |
tgatctgttgtatttcatgtggcttttgactagttgccctgaagcaatggcagacat |
37950688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 431
Target Start/End: Original strand, 30707493 - 30707701
Alignment:
| Q |
223 |
gatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttg |
322 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||| || ||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || | |
|
|
| T |
30707493 |
gatctgttatatttcatgtgactcttaactagttgtccagctgcaattgcagacatgagtgatagctcgccggcaagtaccgaaccagctacgatggtgg |
30707592 |
T |
|
| Q |
323 |
ccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcc |
422 |
Q |
| |
|
||| | |||| | |||||| ||||||| ||| | | || || ||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| |
|
|
| T |
30707593 |
ccaatagcctagcatttgcacctggagattctgtgttggcgcccttaacaccaagtaaattaagacaagctgactgagatgcaagttgtgttccccctcc |
30707692 |
T |
|
| Q |
423 |
tactgtacc |
431 |
Q |
| |
|
|| ||||| |
|
|
| T |
30707693 |
cacagtacc |
30707701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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