View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_27 (Length: 431)
Name: NF17168_low_27
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 30000990 - 30001382
Alignment:
| Q |
18 |
gaatcatctgatattgtgagaaatgttggtttggatgttgtttcggattcggataggcgtgatacaggttgttgtgcaattggttcaagggatcatgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30000990 |
gaatcatctgatattgtgagaaatgttggtttggatgttgtttcggattcggatagacatgatacgggttgttgtgcaattggttcaagggatcatgaag |
30001089 |
T |
|
| Q |
118 |
tggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30001090 |
tggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtc |
30001189 |
T |
|
| Q |
218 |
ttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggtgagttactttgttcattttaagcacattgactttaggttgaggatattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30001190 |
ttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggtgagttactttgttcattttaagcacattgactttaggttgaggatattg |
30001289 |
T |
|
| Q |
318 |
gaacttggaagatataagtttcaagtttgattgttatgttattcttaaagaaatatgagtcttttagaagtttgtggagaatttcagatgtgtt |
411 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30001290 |
gaacttggaagatat-agtttcaagtttgattgttatgttattcttaaagaaatatgagtcttttagaagtttgcggagaatttcagatgtgtt |
30001382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 268
Target Start/End: Original strand, 45199193 - 45199361
Alignment:
| Q |
100 |
gttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaa |
199 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| | | | ||||| ||| ||||||||||||||||||| || ||||| |||||||||||||| || |
|
|
| T |
45199193 |
gttcaagggatcctgaagtggaagaagaatatcaaattcagcttgctttagagctgagtgcaaaggaggatcccgaggctgtacagattgaagctgttaa |
45199292 |
T |
|
| Q |
200 |
gcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggt |
268 |
Q |
| |
|
||| || |||||||| |||||| | ||||||||||||||||||||| |||| |||||| |||||||||| |
|
|
| T |
45199293 |
gcaaatcagtttgggatcttgtcaccctgataatacaccagctgaagttgtcgcataccgatactgggt |
45199361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University