View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_3 (Length: 847)
Name: NF17168_low_3
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 814; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 1 - 838
Target Start/End: Complemental strand, 55174198 - 55173361
Alignment:
| Q |
1 |
atggattcataagattgattgatgttgtacttttcaggcgtggccagacattcttgataaggcaagacatggaggtttgaacgttattcaaacttacgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174198 |
atggattcataagattgattgatgttgtacttttcaggcgtggccagacattcttgataaggcaagacatggaggtttgaacgttattcaaacttacgtg |
55174099 |
T |
|
| Q |
101 |
ttttggaacgctcatgagccagagcaaggcaaggtatatgattaattaaatgacaaaattaatctcttgactcaatgtatggaacatttgattgtaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174098 |
ttttggaacgctcatgagccagagcaaggcaaggtatatgattaattaaatgacaaaattaatctcttgactcaatgtatggaacatttgattgtaaact |
55173999 |
T |
|
| Q |
201 |
taatttgtttatcaaacgttatgcagttcaactttgaaggcaacaatgatttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccct |
300 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173998 |
taatttgtttatcaaacgttatgcagttcaattttgaaggcaacaatgatttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccct |
55173899 |
T |
|
| Q |
301 |
cagggttggaccgttcatccaagccgaatggaaccacgggtatgtatgtgtgggaggcttcttctaacctagctttatacattactattctttctaaccc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
55173898 |
cagggttggaccgttcatccaagccgaatggaaccacgggtatgtatgtgtgggaggcttcttctaacctagttttatacatcactattctttctaaccc |
55173799 |
T |
|
| Q |
401 |
tctcaatactttcataaatcagaggacttccatattggctaagagaggttccagggatcatattccgctctgacaatgaaccctacaagaaacacatgaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55173798 |
tctcaatactttcataaatcagaggacttccatattggctaagagaggttccagggatcatattccgctctgacaatgaaccctacaagaaatacatgaa |
55173699 |
T |
|
| Q |
501 |
agcatacgtgtcaaaaattatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaac |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173698 |
agcatacgtgtcaaaaattatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaac |
55173599 |
T |
|
| Q |
601 |
catattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggagttccgtggatcatgtgca |
700 |
Q |
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| T |
55173598 |
catattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacatcggagttccgtggatcatgtgca |
55173499 |
T |
|
| Q |
701 |
agcagaaggatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttattt |
800 |
Q |
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| T |
55173498 |
agcagaaggatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttattt |
55173399 |
T |
|
| Q |
801 |
ggcagatcaatgcatgcaatggaagacattgtgatgat |
838 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
55173398 |
ggcagatcaatgcatgcaatggaagacattgtggtgat |
55173361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 583 - 732
Target Start/End: Original strand, 27721147 - 27721296
Alignment:
| Q |
583 |
attgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggag |
682 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||| | ||||||| ||||||||||||||| ||||| |||||||| | | | | |||| |
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| T |
27721147 |
attgagaatgagtacaaccacatccaacttgcttatgaagctgatggagataattatgttcagtgggctgcaaaaatggcagtttcactatataatggag |
27721246 |
T |
|
| Q |
683 |
ttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
732 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| ||||| || |||||| |
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| T |
27721247 |
ttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt |
27721296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 27720600 - 27720705
Alignment:
| Q |
246 |
atgatttggtgaagttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgttcatccaagccgaatggaaccacgggtatgt |
345 |
Q |
| |
|
||||||||||||| ||| ||| |||||| ||| ||||||||||| || ||||| || |||| || ||||||||||| |||||||| ||||||||||| |
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| T |
27720600 |
atgatttggtgaaattccttaagcttgtacaagagaaaggaatgtatgttacccttagaattggccctttcatccaagctgaatggaatcacgggtatgt |
27720699 |
T |
|
| Q |
346 |
atgtgt |
351 |
Q |
| |
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||||| |
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| T |
27720700 |
gtgtgt |
27720705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 27720793 - 27720854
Alignment:
| Q |
421 |
agaggacttccatattggctaagagaggttccagggatcatattccgctctgacaatgaacc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||||||| ||| |||||||||| |
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|
| T |
27720793 |
agaggacttccatattggctaagagaggtccctgacatcatattccgttctaacaatgaacc |
27720854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 578
Target Start/End: Original strand, 27720986 - 27721035
Alignment:
| Q |
529 |
atgaaagatgagaagctctttgctccccaaggaggccccatcatcttggc |
578 |
Q |
| |
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|||||||| || || ||||||||||| ||||||||||| ||||||||||| |
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| T |
27720986 |
atgaaagaagaaaaactctttgctcctcaaggaggccctatcatcttggc |
27721035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 732
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
| Q |
679 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
732 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||| ||||| || |||||| |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt |
42989290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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