View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_31 (Length: 419)

Name: NF17168_low_31
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_low_31
NF17168_low_31
[»] chr5 (8 HSPs)
chr5 (16-410)||(10286792-10287183)
chr5 (16-410)||(10294713-10295114)
chr5 (16-257)||(10302469-10302713)
chr5 (16-236)||(10280203-10280420)
chr5 (311-410)||(10279533-10279632)
chr5 (294-410)||(10302728-10302848)
chr5 (339-410)||(10265347-10265418)
chr5 (121-252)||(10265525-10265656)
[»] chr8 (2 HSPs)
chr8 (342-410)||(30582883-30582951)
chr8 (123-235)||(30581373-30581485)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 10286792 - 10287183
Alignment:
Q  16 ttatatgtgtttcaggtgccatatttatggttttgtatcgtggtccatcgttgataggatataccgaaccagtcaatattataccacagaatgaaataat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  10286792 ttatatgtgtttcaggtgccatatttatggttttgtatcgtggtccatcggtgataggatataccgaaccagtca---ttataccacagaatgaaataat 10286888  T
Q  116 cgtcagtggtcagccagagccttctggatggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgataggcaac 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10286889 cgtcagtggtcagccagagccttctgcatggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgataggcaac 10286988  T
Q  216 tgcacgtgcatggctgctttcttagcgattcaggtatttatcnnnnnnnnnatatccattaaatgannnnnnnnaattcattaagtaactgttgctatca 315  Q
    ||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||        ||||||||||||||||||||||||||    
T  10286989 tgcacgtgcatggctgctttcttagcgattcaggtatctatcttttttgttatatccattaaatgattttttttaattcattaagtaactgttgctatca 10287088  T
Q  316 ttagcaagtttaattaattttcattaattattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattcattcttct 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10287089 ttagcaagtttaattaattttcattaattattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattcattcttct 10287183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 10294713 - 10295114
Alignment:
Q  16 ttatatgtgtttcaggtgccatatttatggttttgtatcgtggtccatcgttgataggatataccgaaccagtcaatattataccacagaatgaaataat 115  Q
    ||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||| |   | |||||||| |||||||||||    
T  10294713 ttatatgtgtttctggtgccatatttatggctttgtaccgcggtccatcgttgataggatataacgaaccagtga---tcataccacataatgaaataat 10294809  T
Q  116 cgtcagtggtcagccagagccttctgg------atggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgata 209  Q
     |||||||||||||||||||||| |||      |||||||||||||||||||| |||||||||||  || ||||| |||||||||||| |||||||||||    
T  10294810 tgtcagtggtcagccagagccttttggttttggatggttgattactggtttactgaatcttggatcagaaaatttcgaacttggagttatgttcttgata 10294909  T
Q  210 ggcaactgcacgtgcatggctgctttcttagcgattcaggtatttatcnnnnnnnnnatatccattaaatgannnnnnnnaattcattaagtaactgttg 309  Q
    || |||||||||||| ||||||||||| |||| ||||||||||| |||         |||| ||||||||||        |||||||||||| |||||||    
T  10294910 ggtaactgcacgtgcttggctgctttcctagccattcaggtattgatctttttttttatatacattaaatgattttttttaattcattaagtgactgttg 10295009  T
Q  310 ctatcattagcaagtttaattaattt----tcattaattattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattcatt 405  Q
     ||||| | | |||||||| |  |||    | | ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  10295010 atatcaatggaaagtttaacttttttccaataactaattattttcaggcgccggtactaaaaaagtatcctgcatatttatctgtgacagcattttcatt 10295109  T
Q  406 cttct 410  Q
    |||||    
T  10295110 cttct 10295114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 10302469 - 10302713
Alignment:
Q  16 ttatatgtgtttcaggtgccatatttatggttttgtatcgtggtccatcgttgataggatataccgaaccagtcaatattataccacagaatgaaataat 115  Q
    ||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||| |||||||||    || |||||||| |||||||||||    
T  10302469 ttatatgtgtttctggtgccatatttatggctttgtaccgcggtccatcgttgataggatataacgaaccagt---gatcataccacataatgaaataat 10302565  T
Q  116 cgtcagtggtcagccagagcc------ttctggatggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgata 209  Q
     ||||||||||||||||||||      || ||||||||||||||||||||||| |||||||||||| || |||||  ||||||||||| |||||||||||    
T  10302566 tgtcagtggtcagccagagccttttggttttggatggttgattactggtttactgaatcttggattagaaaatttcaaacttggagttatgttcttgata 10302665  T
Q  210 ggcaactgcacgtgcatggctgctttcttagcgattcaggtatttatc 257  Q
    || |||||||| | ||||||||||||| |||| |||||||||| ||||    
T  10302666 ggtaactgcacattcatggctgctttcctagccattcaggtatctatc 10302713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 10280420 - 10280203
Alignment:
Q  16 ttatatgtgtttcaggtgccatatttatggttttgtatcgtggtccatcgttgataggatataccgaaccagtcaatattataccacagaatgaaataat 115  Q
    |||||||||| || |||||  |||| |||||||||||||| ||||||||||||||||||||||| ||||  |||    |||||||||||||||| ||||     
T  10280420 ttatatgtgtctcgggtgctgtattgatggttttgtatcgcggtccatcgttgataggatatactgaactggtcg---ttataccacagaatgacataag 10280324  T
Q  116 cgtcagtggtcagccagagccttctggatggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgataggcaac 215  Q
     ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  10280323 tgtcggtggtcagccagagccttctggatggttgatcagtggtttacagaatcttggattagataattttgaacttggagttgtgttcttgatagggaac 10280224  T
Q  216 tgcacgtgcatggctgctttc 236  Q
       | ||||||||||||||||    
T  10280223 actatgtgcatggctgctttc 10280203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 311 - 410
Target Start/End: Complemental strand, 10279632 - 10279533
Alignment:
Q  311 tatcattagcaagtttaattaattttcattaattattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattcattcttct 410  Q
    |||||| ||||||||||||| |||| |||| ||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  10279632 tatcatcagcaagtttaatttatttccattgattattttcaggcgcctgtattaaaaaagtatcctgcaaatctatctgtaacagcatattcattcttct 10279533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 10302728 - 10302848
Alignment:
Q  294 cattaagtaactgttgctatcattagcaagtttaattaattttcattaatta----ttttcaggcaccggtactaaaaaagtatcctgcaaatctatctg 389  Q
    |||||||| ||||||| ||||| | |||||||||| | |||| || ||| ||    ||||||||| | |||||||||||||||||||||| ||||||| |    
T  10302728 cattaagtgactgttgatatcaatggcaagtttaacttatttccaataactaattgttttcaggcgcaggtactaaaaaagtatcctgcatatctatcag 10302827  T
Q  390 tgacagcatattcattcttct 410  Q
    ||||||||| |||||||||||    
T  10302828 tgacagcattttcattcttct 10302848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 10265418 - 10265347
Alignment:
Q  339 ttaattattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattcattcttct 410  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||  |||| || ||||||||||||| |||||    
T  10265418 ttaattattttcaggcaccagtattaaaaaaatatcctgcaaacttatccgtcacagcatattcatacttct 10265347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 10265656 - 10265525
Alignment:
Q  121 gtggtcagccagagccttctggatggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgataggcaactgcac 220  Q
    |||||||||| |||||||| ||||||||  ||  |||||||| | |||||||  | ||  ||||| | ||||| ||| ||| ||||||||| |||||||     
T  10265656 gtggtcagcccgagccttccggatggtttgttggtggtttactggatcttgggcttgaccattttcatcttggggttctgtgcttgatagggaactgcat 10265557  T
Q  221 gtgcatggctgctttcttagcgattcaggtat 252  Q
    ||| |||||||||||  |||| ||||| ||||    
T  10265556 gtgtatggctgcttttctagccattcaagtat 10265525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 30582883 - 30582951
Alignment:
Q  342 attattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattcattcttct 410  Q
    ||||||||||||| ||  || |||| |||||||||||||| |||||||| ||||||||||||| |||||    
T  30582883 attattttcaggctccaatattaaagaagtatcctgcaaacctatctgtcacagcatattcatacttct 30582951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 30581373 - 30581485
Alignment:
Q  123 ggtcagccagagccttctggatggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgataggcaactgcacgt 222  Q
    ||||| |||||||| |||||||||||  ||| |||||||  |||||||||||| ||  ||||| |  |||| ||| ||| ||| ||||| ||||||| ||    
T  30581373 ggtcaaccagagccatctggatggttagttagtggtttaatgaatcttggattagaccattttcatgttggggttctgtgcttaataggaaactgcatgt 30581472  T
Q  223 gcatggctgcttt 235  Q
    |||||||| ||||    
T  30581473 gcatggctacttt 30581485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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