View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_35 (Length: 412)
Name: NF17168_low_35
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 32 - 395
Target Start/End: Complemental strand, 11029384 - 11029024
Alignment:
| Q |
32 |
tctagtattaagagtgtaaatatgattgtgttctttacctgatctaatgattaatattaactttccatgctaatccccacctatatgtgtgcttgtgact |
131 |
Q |
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| T |
11029384 |
tctagtattaagagtgtaaatacgattgtgttctttacctgatctaatggttaacattaactttccatgctaatccccacctatatgcctgcttgtgact |
11029285 |
T |
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| Q |
132 |
tgccttatatgcatgcttatgatttgtgtgtggcatattgtataatgtgacgtgtttgtatatgtgtcgacatattatgtaacttgtggttccnnnnnnn |
231 |
Q |
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| T |
11029284 |
tgccttatatgcatgcttgtgatttgtgtgtggcatattgtataatgtgacgtgtttgtatgtgtgtcggcatattatgtaacttgtggttcc-tttttt |
11029186 |
T |
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| Q |
232 |
ctatatgtctatgtttcaagggaactaacgtcaaaaacatcaatatttggttgtcatcatcaaaaagggaaagaatgtagttgctcctttatcttggttt |
331 |
Q |
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| T |
11029185 |
ctatatgtctatgtttcaagggaactaacgtcaaaaacatcaatgtttggttgtcatcatcaaaaaggggaagaacgtagttgcttctttatcttggttt |
11029086 |
T |
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| Q |
332 |
tgattatgnnnnnnngttgatgtaatgtttaactattttagaattgattagttatgtaaaataa |
395 |
Q |
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| T |
11029085 |
tgattatg-ttttttgttgatgtaatgtttaacta-tttagaattgattagttatgtaaaataa |
11029024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 11029789 - 11029845
Alignment:
| Q |
42 |
agagtgta-aatatgattgtgttctttacctgatctaatgattaatattaactttcc |
97 |
Q |
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| T |
11029789 |
agagtgtataataagattgtgttctttacttgatctaatgtctaatatttactttcc |
11029845 |
T |
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