View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_36 (Length: 403)
Name: NF17168_low_36
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 74 - 392
Target Start/End: Complemental strand, 18825223 - 18824905
Alignment:
| Q |
74 |
tatcacattcagagcatctttcattgatannnnnnnaaggaattcattttgagtttcatactatattattatcaagtactcctcacaacgtcatgtaata |
173 |
Q |
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| T |
18825223 |
tatcacattcagagcatctttcattgatatttttttaaggaattcattttgagtttcatactatattattatcaagtactcctcacaacgtcatgtaata |
18825124 |
T |
|
| Q |
174 |
cttatacaacttatgcatatttttctccaatgatgacaaaattatgcaacnnnnnnnaattaaggtacctcacgaaattctataaaacc-nnnnnnnnng |
272 |
Q |
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| T |
18825123 |
cttatacaacttatgcatatttttctccaatgatgacaaaattatgcaac-ttttttaattaaggtacctcacgaaattctataaaaccaaaaaaaaaaa |
18825025 |
T |
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| Q |
273 |
acactcattcatctttcaatgaaatgagctatgatactcttattaaagatgttctaagtgtgatcggttacatgaatcaaataacgtcgtactattctgt |
372 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18825024 |
acactcattcatctttcaataaaatgagctatgatactcttattgaagatgctctaagtgtgatcggttacatgaatcaaatgacgtcgtactattctgt |
18824925 |
T |
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| Q |
373 |
tatatatctaagagtttctt |
392 |
Q |
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||||||||||||||||||| |
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| T |
18824924 |
catatatctaagagtttctt |
18824905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 18825304 - 18825246
Alignment:
| Q |
18 |
atggtcaacaatttgttatgcataaccccttaatgtccttcatattgtgtattgaatat |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18825304 |
atggtcaacaatttgttatgcataaccccttaatgtccttcatattgtgtattgaatat |
18825246 |
T |
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