View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_37 (Length: 401)
Name: NF17168_low_37
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_37 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 54303661 - 54304061
Alignment:
| Q |
1 |
aagaaaagaaaaaatgtcgaaaacttggtaaacttcgtaactgaaggtgtctatgaagtagaagaactcaaagaagagggtttcataacggacttactat |
100 |
Q |
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| T |
54303661 |
aagaaaagagaaaatgtcgaaaacttggtaaacttggtaactgaaggtgtctatgaagtagaagaactcaaagaagagggtttcataacggacttactat |
54303760 |
T |
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| Q |
101 |
ataaggatgatgttatcaccaacttgaaggataggcttggggtgaagtcactgccttttgtttctttcaaagaatactctcgcgttagtaaatcgactgt |
200 |
Q |
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| T |
54303761 |
ataaggatgatgttatcaccaacttgaaggaaaggcttggggtgaaatcactgccttttgtttctttcaaagaatactctcgcgttagtaaatcgactgt |
54303860 |
T |
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| Q |
201 |
tggattaatatcaagggctaaagaactaatagccatcattcgagacgcagggtctatcactagtacaatggagtttgttgagaatatatatagggtcaga |
300 |
Q |
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| T |
54303861 |
tggattaatatcaagggctaaagaactaatagccatcattcgagacgcagggtctatcactagtacaacggagtttgttgagaatatatatagggtcaga |
54303960 |
T |
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| Q |
301 |
ggatcaacagaattcaaggctgttattgtccgaattgacagttcaggaggtaaatttcgggcatctaattatatgtggagagaaatgaaacgtcttgctg |
400 |
Q |
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| T |
54303961 |
gcatcaacagaattcaaggttgttattgtccgaattgacagttcaggaggtaaatttagggcatctaattatatgtggagagaaatgaaacgtcttgctg |
54304060 |
T |
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| Q |
401 |
c |
401 |
Q |
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| T |
54304061 |
c |
54304061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 56209217 - 56209139
Alignment:
| Q |
173 |
aatactctcgcgttagtaaatcgactgttggattaatatcaagggctaaagaactaatagccatcattcgagacgcagggtc |
254 |
Q |
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| T |
56209217 |
aatactctcgaattagaaaatggactgttgga---atatcaaagggtaaagaactaatagccatcattcgagcctcagggtc |
56209139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 45881976 - 45881918
Alignment:
| Q |
31 |
aacttcgtaactgaaggtgtctatgaagtagaagaactcaaagaagagggtttcataac |
89 |
Q |
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| T |
45881976 |
aacttcataaatgaaggtgtctatcaagtagacagactgaaagaagagggtttcataac |
45881918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 45879196 - 45879156
Alignment:
| Q |
311 |
aattcaaggctgttattgtccgaattgacagttcaggaggt |
351 |
Q |
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| T |
45879196 |
aattcaaggctgctattatccgaattgacagtccaggaggt |
45879156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 56209073 - 56209033
Alignment:
| Q |
311 |
aattcaaggctgttattgtccgaattgacagttcaggaggt |
351 |
Q |
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| T |
56209073 |
aattcaaggctgttattatccgaattaacagtccaggaggt |
56209033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 10520907 - 10520954
Alignment:
| Q |
304 |
tcaacagaattcaaggctgttattgtccgaattgacagttcaggaggt |
351 |
Q |
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| T |
10520907 |
tcaaaagaaatcaaggctgttattatccgaattgacagtacaggaggt |
10520954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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