View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_38 (Length: 400)
Name: NF17168_low_38
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 29282311 - 29282127
Alignment:
| Q |
42 |
ggggcatttcaccgtcgaagatgatatccaattcatctttaaattgtgcggctctaggtttttcaattggttgttgatggatttcaccttttcagcattt |
141 |
Q |
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| T |
29282311 |
ggggcatttcgccgtcgaagatgatatccaattcatctttaaattgtgcggctctaggtttttcaattagttgttgatggatttcaccttttcagcattt |
29282212 |
T |
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| Q |
142 |
tttattattgtctnnnnnnntannnnnnnnnattactcttattttgtttttatcgtgtgcatcaaacacatgatatgataaattg |
226 |
Q |
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| T |
29282211 |
tttattattgtccaaaaaaatatttttttttattactcttatcttatttttatcgtgtgcatcaaacacataatatgataaattg |
29282127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 29282090 - 29282045
Alignment:
| Q |
297 |
atcctaaatttatagtgttggacacctccatcttttgagaaataaa |
342 |
Q |
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| T |
29282090 |
atcctaaatttatagtgttggacacctccatcttttgagaaataaa |
29282045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 21748254 - 21748222
Alignment:
| Q |
188 |
tttttatcgtgtgcatcaaacacatgatatgat |
220 |
Q |
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| T |
21748254 |
tttttatcatgtgcatcaaacacatgatatgat |
21748222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 31382710 - 31382670
Alignment:
| Q |
44 |
ggcatttcaccgtcgaagatgatatccaattcatctttaaa |
84 |
Q |
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| T |
31382710 |
ggcatttctccatcaaagatgatatccaattcatctttaaa |
31382670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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