View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_41 (Length: 378)

Name: NF17168_low_41
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_low_41
NF17168_low_41
[»] chr2 (14 HSPs)
chr2 (116-358)||(42649657-42649898)
chr2 (1-51)||(7475523-7475573)
chr2 (1-51)||(23268077-23268127)
chr2 (1-53)||(21936079-21936131)
chr2 (1-51)||(33380207-33380257)
chr2 (1-60)||(13354837-13354896)
chr2 (1-51)||(9293591-9293641)
chr2 (1-51)||(35160757-35160807)
chr2 (1-50)||(10661888-10661937)
chr2 (1-51)||(43330912-43330962)
chr2 (55-91)||(42649925-42649961)
chr2 (1-48)||(31174849-31174896)
chr2 (1-51)||(14941381-14941431)
chr2 (1-49)||(21393703-21393751)
[»] chr1 (17 HSPs)
chr1 (1-53)||(9910308-9910360)
chr1 (1-53)||(36966723-36966775)
chr1 (1-52)||(37821849-37821900)
chr1 (1-51)||(19015404-19015454)
chr1 (1-52)||(40214987-40215038)
chr1 (1-53)||(6883485-6883537)
chr1 (1-53)||(32000282-32000334)
chr1 (1-47)||(16045813-16045859)
chr1 (1-51)||(18404442-18404492)
chr1 (1-51)||(40273702-40273752)
chr1 (1-51)||(41876457-41876507)
chr1 (1-51)||(44094698-44094748)
chr1 (1-51)||(25463676-25463726)
chr1 (1-51)||(25973414-25973464)
chr1 (1-48)||(3559620-3559667)
chr1 (14-51)||(34519758-34519795)
chr1 (14-51)||(51620980-51621017)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-51)||(12842-12892)
[»] chr8 (28 HSPs)
chr8 (1-62)||(8453822-8453884)
chr8 (1-51)||(17841865-17841915)
chr8 (1-51)||(40780144-40780194)
chr8 (1-53)||(35353039-35353091)
chr8 (1-51)||(15187560-15187610)
chr8 (1-51)||(32064745-32064795)
chr8 (1-51)||(34665382-34665432)
chr8 (2-51)||(24211569-24211618)
chr8 (1-53)||(32393856-32393908)
chr8 (1-51)||(20091816-20091866)
chr8 (1-51)||(26042131-26042181)
chr8 (1-51)||(42755057-42755107)
chr8 (4-51)||(1645983-1646030)
chr8 (1-51)||(6108248-6108298)
chr8 (1-51)||(31347797-31347847)
chr8 (1-43)||(38016979-38017021)
chr8 (1-50)||(14128865-14128914)
chr8 (1-51)||(7017880-7017930)
chr8 (1-47)||(37986070-37986116)
chr8 (1-51)||(39772816-39772866)
chr8 (1-41)||(7021988-7022028)
chr8 (1-52)||(27835468-27835519)
chr8 (1-52)||(37132673-37132724)
chr8 (1-51)||(41819793-41819843)
chr8 (1-46)||(25581254-25581299)
chr8 (1-50)||(27782132-27782181)
chr8 (7-52)||(30055542-30055587)
chr8 (25-53)||(15972901-15972929)
[»] chr4 (21 HSPs)
chr4 (1-51)||(24128239-24128289)
chr4 (1-51)||(47290066-47290116)
chr4 (1-62)||(46441833-46441894)
chr4 (1-53)||(2624835-2624887)
chr4 (1-53)||(22199259-22199311)
chr4 (1-53)||(49387903-49387955)
chr4 (1-51)||(10442804-10442854)
chr4 (1-51)||(31078834-31078884)
chr4 (1-51)||(36072947-36072997)
chr4 (1-47)||(36073354-36073400)
chr4 (1-51)||(44893426-44893476)
chr4 (1-57)||(50156593-50156649)
chr4 (1-51)||(53123030-53123081)
chr4 (1-51)||(4751446-4751496)
chr4 (1-51)||(21802337-21802387)
chr4 (1-51)||(24392667-24392717)
chr4 (1-51)||(33530703-33530753)
chr4 (1-50)||(7745127-7745176)
chr4 (1-51)||(44893228-44893279)
chr4 (1-51)||(23964480-23964530)
chr4 (1-51)||(37934956-37935006)
[»] chr3 (25 HSPs)
chr3 (1-51)||(3137429-3137479)
chr3 (1-51)||(34482925-34482975)
chr3 (1-53)||(6041882-6041934)
chr3 (1-53)||(3456062-3456114)
chr3 (1-53)||(37217068-37217120)
chr3 (1-53)||(48160903-48160955)
chr3 (1-51)||(2754717-2754767)
chr3 (1-51)||(3574542-3574592)
chr3 (1-51)||(11347268-11347318)
chr3 (1-51)||(37522053-37522103)
chr3 (1-51)||(42297353-42297403)
chr3 (1-53)||(30385009-30385061)
chr3 (3-51)||(33113793-33113841)
chr3 (1-51)||(8320599-8320649)
chr3 (1-50)||(9797044-9797093)
chr3 (1-51)||(19650915-19650965)
chr3 (1-51)||(41224233-41224283)
chr3 (1-53)||(8362060-8362112)
chr3 (7-51)||(24343547-24343591)
chr3 (1-52)||(33145712-33145762)
chr3 (1-40)||(42921154-42921193)
chr3 (1-51)||(22426359-22426409)
chr3 (1-51)||(36865042-36865092)
chr3 (14-48)||(40327878-40327912)
chr3 (23-51)||(47402633-47402661)
[»] chr5 (18 HSPs)
chr5 (1-58)||(4434022-4434079)
chr5 (1-53)||(22913069-22913121)
chr5 (1-53)||(33584344-33584396)
chr5 (1-51)||(4892202-4892252)
chr5 (1-51)||(6043526-6043576)
chr5 (1-51)||(25398238-25398288)
chr5 (1-53)||(3522021-3522073)
chr5 (1-53)||(11361146-11361198)
chr5 (1-51)||(2477636-2477686)
chr5 (1-51)||(3362778-3362828)
chr5 (1-51)||(38899741-38899791)
chr5 (3-51)||(14138668-14138716)
chr5 (1-52)||(12850800-12850851)
chr5 (1-47)||(8145379-8145425)
chr5 (1-53)||(17545700-17545752)
chr5 (1-51)||(37321808-37321859)
chr5 (1-51)||(12614748-12614798)
chr5 (1-47)||(27481830-27481876)
[»] chr7 (17 HSPs)
chr7 (1-53)||(4974750-4974802)
chr7 (1-52)||(48880942-48880993)
chr7 (1-51)||(15329273-15329323)
chr7 (1-51)||(15577865-15577915)
chr7 (1-51)||(35444558-35444608)
chr7 (1-51)||(42611811-42611861)
chr7 (1-51)||(45637712-45637762)
chr7 (1-53)||(20010112-20010164)
chr7 (1-53)||(24394970-24395022)
chr7 (1-52)||(3961978-3962029)
chr7 (1-51)||(25167865-25167915)
chr7 (1-53)||(34482833-34482885)
chr7 (1-51)||(18036978-18037028)
chr7 (1-47)||(29737143-29737189)
chr7 (1-51)||(37477095-37477145)
chr7 (1-53)||(15238380-15238432)
chr7 (1-48)||(36790481-36790528)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-52)||(11620-11671)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-51)||(4396-4446)
[»] chr6 (15 HSPs)
chr6 (1-51)||(28675148-28675198)
chr6 (1-51)||(33695342-33695392)
chr6 (1-51)||(33696696-33696746)
chr6 (1-53)||(17176036-17176088)
chr6 (1-52)||(17705480-17705531)
chr6 (1-51)||(6127275-6127325)
chr6 (1-51)||(18365588-18365638)
chr6 (1-51)||(18370852-18370902)
chr6 (1-51)||(23291099-23291149)
chr6 (1-51)||(25986930-25986980)
chr6 (1-51)||(18889712-18889761)
chr6 (1-40)||(32702216-32702255)
chr6 (1-51)||(6031756-6031806)
chr6 (1-45)||(11548603-11548647)
chr6 (16-48)||(8515755-8515787)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-51)||(41011-41061)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-51)||(47850-47900)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-50)||(3069-3118)
[»] scaffold0228 (3 HSPs)
scaffold0228 (1-40)||(8413-8452)
scaffold0228 (1-40)||(15995-16034)
scaffold0228 (1-40)||(25947-25986)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 116 - 358
Target Start/End: Complemental strand, 42649898 - 42649657
Alignment:
Q  116 tgattatgctctaataagtttattacgccgtctccatgccnnnnnnncgtaacattaaaaatgattatggtgctttaataagtttcatgtatataaggtg 215  Q
    |||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42649898 tgattatgctctaataagtttattactccgtctccatgccaaaaaa-cgtaacattaaaaatgattatggtgctttaataagtttcatgcatataaggtg 42649800  T
Q  216 gataaaaccggaaaaccgatcacaaaattatgtctcacaatgaaccatttgaaacctttctatcagctgaagatatcgcatcatttaaaacttttcagga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42649799 gataaaaccggaaaaccgatcacaaaattatgtctcacaatgaaccatttgaaacctttctatcagctgaagatatcgcatcatttaaaacttttcagga 42649700  T
Q  316 catccacttgatgtattctttttgagcaaggagttgacttgct 358  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42649699 catccacttgatgtattctttttgagcaaggagttgacttgct 42649657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7475523 - 7475573
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7475523 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 7475573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23268077 - 23268127
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23268077 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 23268127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21936131 - 21936079
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21936131 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 21936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33380257 - 33380207
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33380257 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13354896 - 13354837
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcatgattaaa 60  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||    
T  13354896 tcattcttgaaattttcttgataaaatctttcttgatatataacattgctctttattaaa 13354837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9293591 - 9293641
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9293591 tcattcttgaaaatttcttgataaaatctttcttgatatatagcattgctc 9293641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35160807 - 35160757
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  35160807 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 35160757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10661937 - 10661888
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgct 50  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  10661937 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 10661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43330962 - 43330912
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  43330962 tcattcttgaattttttttgagaaaatctttcttgatatatagcattgctc 43330912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 42649961 - 42649925
Alignment:
Q  55 attaaattccacaatttctaacattaaaaatgatctt 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  42649961 attaaattccacaatttctaacattaaaaatgatctt 42649925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31174849 - 31174896
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattg 48  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||||    
T  31174849 tcattcttgaaattttcttaataaaatctttcttgatatataacattg 31174896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14941381 - 14941431
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||  |||||| | |||||||||||||||||||||||||||||    
T  14941381 tcattcttgaatctttcttaataaaatctttcttgatatatagcattgctc 14941431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21393703 - 21393751
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgc 49  Q
    |||||||| || ||||||||| ||||| |||||||||||||||||||||    
T  21393703 tcattcttaaatttttcttgagaaaatttttcttgatatatagcattgc 21393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9910308 - 9910360
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9910308 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 9910360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36966723 - 36966775
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36966723 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 36966775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37821849 - 37821900
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37821849 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 37821900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19015454 - 19015404
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19015454 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 19015404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40215038 - 40214987
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40215038 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 40214987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6883537 - 6883485
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  6883537 tcattcttgaaattttcttaaaaaaatctttcttaatatatagcattgctcat 6883485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32000282 - 32000334
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32000282 tcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctcat 32000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16045813 - 16045859
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  16045813 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 16045859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18404492 - 18404442
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  18404492 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 18404442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40273752 - 40273702
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  40273752 tcattcttgaatttttcttgaaaaaatctttcttgatatctagcattgctc 40273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41876457 - 41876507
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  41876457 tcattcttaaaatttttttgaaaaaatctttcttgatatatagcattgctc 41876507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44094748 - 44094698
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  44094748 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 44094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25463726 - 25463676
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  25463726 tcattcttaaaattttcttcataaaatctttcttgatatatagcattgctc 25463676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25973464 - 25973414
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  25973464 tcattcttgaaattttcatgataaaatctttcttgatatataacattgctc 25973414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3559667 - 3559620
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattg 48  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  3559667 tcattcttaaaatttttttgataaaatctttcttgatatatagcattg 3559620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 34519795 - 34519758
Alignment:
Q  14 tttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||| | |||||||||||||||||||||||||||||    
T  34519795 tttcttaataaaatctttcttgatatatagcattgctc 34519758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 51621017 - 51620980
Alignment:
Q  14 tttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||| | |||||||||||||||||||||||||||||    
T  51621017 tttcttaataaaatctttcttgatatatagcattgctc 51620980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12892 - 12842
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12892 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 12842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8453884 - 8453822
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat-gattaaatt 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  8453884 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgttcatcgattaaatt 8453822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17841865 - 17841915
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17841865 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 17841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40780144 - 40780194
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40780144 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 40780194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35353091 - 35353039
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35353091 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcat 35353039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15187610 - 15187560
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15187610 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15187560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32064795 - 32064745
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32064795 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 32064745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34665432 - 34665382
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34665432 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24211569 - 24211618
Alignment:
Q  2 cattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24211569 cattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32393908 - 32393856
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  32393908 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 32393856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20091816 - 20091866
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  20091816 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26042131 - 26042181
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  26042131 tcattcttgaaattttcttgataaaatctttcttaatatatagcattgctc 26042181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42755057 - 42755107
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  42755057 tcattcttgaaattttcttgataaaatctttcttgatatatatcattgctc 42755107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 1645983 - 1646030
Alignment:
Q  4 ttcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  1645983 ttcttaaaattttcttgataaaatctttcttgatatatagcattgctc 1646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6108248 - 6108298
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  6108248 tcattcttaaaattttcttaaaaaaatctttcttgatatataacattgctc 6108298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31347797 - 31347847
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  31347797 tcattcttgaatttttcttgagaaaatatttcttgatatatagcattgctc 31347847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38017021 - 38016979
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatag 43  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38017021 tcattcttgaaattttcttgataaaatctttcttgatatatag 38016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14128914 - 14128865
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgct 50  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  14128914 tcattcttaaaattttattgataaaatctttcttgatatatagcattgct 14128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7017880 - 7017930
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  7017880 tcattcttgaatttttcttaagaaaatctttcatgatatatagcattgctc 7017930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37986070 - 37986116
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 47  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||    
T  37986070 tcattcttaaaatttttttgataaaatctttcttgatatatagcatt 37986116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39772816 - 39772866
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| |||| ||||| |||||||||||||| ||||||||    
T  39772816 tcattcttgaaatttttttgataaaatatttcttgatatataacattgctc 39772866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7022028 - 7021988
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatat 41  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  7022028 tcattcttgaatttttcttgagaaaatctttcttgatatat 7021988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27835468 - 27835519
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||| ||||||| | || |||||| ||||||||||||||||||||    
T  27835468 tcattcttgaatttttcttaataagatctttattgatatatagcattgctca 27835519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37132673 - 37132724
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    |||||||| || ||||||||| ||||| ||| ||||||||||||||||||||    
T  37132673 tcattcttaaatttttcttgataaaatattttttgatatatagcattgctca 37132724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41819793 - 41819843
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||  ||||||| |||||||||||||||||||| ||||||||    
T  41819793 tcattcttaaaacattcttgataaaatctttcttgatatataacattgctc 41819843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25581254 - 25581299
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcat 46  Q
    |||||||||||||||||||   |||| |||||||||||||||||||    
T  25581254 tcattcttgaaattttcttcgtaaaaactttcttgatatatagcat 25581299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27782132 - 27782181
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgct 50  Q
    ||||| |||||  |||||||| ||||| ||||||||||||||||||||||    
T  27782132 tcattattgaatctttcttgataaaatatttcttgatatatagcattgct 27782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 30055587 - 30055542
Alignment:
Q  7 ttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    |||||||||| |||| |||||||| |||| ||||||||||||||||    
T  30055587 ttgaaatttttttgataaaatcttccttggtatatagcattgctca 30055542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 15972901 - 15972929
Alignment:
Q  25 aatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||||||||||||||||    
T  15972901 aatctttcttgatatatagcattgctcat 15972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24128289 - 24128239
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24128289 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 24128239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47290116 - 47290066
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47290116 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 47290066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46441894 - 46441833
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcatgattaaatt 62  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  46441894 tcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataatttaatt 46441833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2624887 - 2624835
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2624887 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 2624835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22199311 - 22199259
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22199311 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 22199259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49387903 - 49387955
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49387903 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 49387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10442804 - 10442854
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10442804 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 10442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31078834 - 31078884
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31078834 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 31078884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36072997 - 36072947
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36072997 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36073400 - 36073354
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36073400 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 36073354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44893476 - 44893426
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44893476 tcattcttgaaatttttttgaaaaaatctttcttgatatatagcattgctc 44893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 50156593 - 50156649
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcatgatt 57  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  50156593 tcattcttaaaattttcttgaaaaaatctttcttaatatatagcattgctcttgatt 50156649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53123081 - 53123030
Alignment:
Q  1 tcattcttgaaattttctt-gaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53123081 tcattcttgaaattttctttgaaaaaatctttcttgatatatagcattgctc 53123030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4751496 - 4751446
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4751496 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc 4751446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21802337 - 21802387
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  21802337 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 21802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24392717 - 24392667
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  24392717 tcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctc 24392667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33530703 - 33530753
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  33530703 tcattcttgaatttttcttgataaaatctttcttgatatatagcattgctc 33530753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7745127 - 7745176
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgct 50  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  7745127 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44893228 - 44893279
Alignment:
Q  1 tcattcttgaaattttctt-gaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  44893228 tcattcttgaaattttttttgaaaaaatctttcttaatatatagcattgctc 44893279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23964480 - 23964530
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| |||| |||||||||||||||||||| ||||||||    
T  23964480 tcattcttaaaatttttttgataaaatctttcttgatatataacattgctc 23964530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37934956 - 37935006
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||| ||||| |||| ||||||||| |||||||||||||||||||    
T  37934956 tcattcttgacatttttttgataaaatcttttttgatatatagcattgctc 37935006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3137429 - 3137479
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3137429 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 3137479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34482925 - 34482975
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34482925 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 34482975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6041934 - 6041882
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6041934 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 6041882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3456114 - 3456062
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  3456114 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 3456062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37217068 - 37217120
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  37217068 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 37217120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48160955 - 48160903
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  48160955 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 48160903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2754767 - 2754717
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  2754767 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 2754717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3574542 - 3574592
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  3574542 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3574592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11347318 - 11347268
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  11347318 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 11347268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37522103 - 37522053
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  37522103 tcattcttaaaattttcttgaaaaaatctttcttgatatatagtattgctc 37522053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42297403 - 42297353
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  42297403 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 42297353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30385061 - 30385009
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  30385061 tcatttttgaaattttcttgataaaatctttcttgataaatagcattgctcat 30385009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 33113841 - 33113793
Alignment:
Q  3 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  33113841 attcttgaaattttcttaataaaatctttcttgatatatagcattgctc 33113793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8320599 - 8320649
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  8320599 tcattcttaaaattttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9797044 - 9797093
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgct 50  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  9797044 tcattcttgaatttttcttgagaaaatctttcttgatatataacattgct 9797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19650915 - 19650965
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||| ||||||| ||||||||    
T  19650915 tcattcttaaaattttcttgataaaatctttcttaatatataacattgctc 19650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41224283 - 41224233
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  41224283 tcattcttgaatttttcttgagaaaatctttcttaatatatagcagtgctc 41224233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8362060 - 8362112
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| |||||||||||   | |||||||||||||||||||||||||    
T  8362060 tcattcttgaatttttcttgaaattttttttcttgatatatagcattgctcat 8362112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 24343591 - 24343547
Alignment:
Q  7 ttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||    
T  24343591 ttgaatttttcttgataaaatctttcttaatatatagcattgctc 24343547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33145762 - 33145712
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    |||||||| ||||||| || | ||||||||||||||||||||||||||||||    
T  33145762 tcattcttaaaatttt-ttaataaaatctttcttgatatatagcattgctca 33145712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42921193 - 42921154
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatata 40  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  42921193 tcattcttaaaattttcttgataaaatctttcttgatata 42921154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22426359 - 22426409
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||| || |||||||||||| |||||||||||| ||||||| ||||||||    
T  22426359 tcatttttaaaattttcttgataaaatctttcttaatatataacattgctc 22426409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36865042 - 36865092
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| | |||||||| ||| ||||||||||||||||    
T  36865042 tcattcttaaaattttcttaataaaatcttccttaatatatagcattgctc 36865092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 40327912 - 40327878
Alignment:
Q  14 tttcttgaaaaaatctttcttgatatatagcattg 48  Q
    |||||||| ||||||||||||||||||||||||||    
T  40327912 tttcttgataaaatctttcttgatatatagcattg 40327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 47402633 - 47402661
Alignment:
Q  23 aaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||    
T  47402633 aaaatctttcttgatatatagcattgctc 47402661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4434022 - 4434079
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcatgatta 58  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4434022 tcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataatta 4434079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22913069 - 22913121
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22913069 tcattcttgaatttttcttgaaaaaatctttcttgatatatagcattgctcat 22913121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33584344 - 33584396
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33584344 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcat 33584396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4892252 - 4892202
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4892252 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 4892202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6043526 - 6043576
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6043526 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 6043576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25398288 - 25398238
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25398288 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 25398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3522021 - 3522073
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  3522021 tcatttttgaaattttcttgaaaaaatctttcttgatatataacattgctcat 3522073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11361146 - 11361198
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  11361146 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 11361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2477686 - 2477636
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  2477686 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 2477636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3362828 - 3362778
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  3362828 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc 3362778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38899741 - 38899791
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  38899741 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc 38899791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 14138716 - 14138668
Alignment:
Q  3 attcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  14138716 attcttgaaattttcttgataaaatctttcttgatatataacattgctc 14138668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12850851 - 12850800
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12850851 tcatttttggaattttcttgataaaatctttcttgatatatagcattgctca 12850800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8145425 - 8145379
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 47  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  8145425 tcattcttgaaattttcttgataaaatctttcttgatatataacatt 8145379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17545700 - 17545752
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| ||||||||| ||| | |||||||||||||||||||||||||    
T  17545700 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctcat 17545752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37321808 - 37321859
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttctt-gatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  37321808 tcattcttaaaattttcttgataaaatctttcttagatatatagcattgctc 37321859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12614748 - 12614798
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||  |||||||| ||||| |||||||||||||||||||||||    
T  12614748 tcattcttgaatctttcttgataaaatatttcttgatatatagcattgctc 12614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27481876 - 27481830
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 47  Q
    ||||||||||| ||||||||| |||||||||||| ||| ||||||||    
T  27481876 tcattcttgaatttttcttgataaaatctttcttaatacatagcatt 27481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4974750 - 4974802
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4974750 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcat 4974802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48880942 - 48880993
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48880942 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 48880993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15329323 - 15329273
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15329323 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15329273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15577865 - 15577915
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15577865 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 15577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35444608 - 35444558
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35444608 tcattcttgaaattttcttgaaaaaatctttcttaatatatagcattgctc 35444558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42611861 - 42611811
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42611861 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45637762 - 45637712
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45637762 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 45637712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20010112 - 20010164
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  20010112 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctcat 20010164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24395022 - 24394970
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  24395022 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcat 24394970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3962029 - 3961978
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3962029 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctca 3961978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25167865 - 25167915
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  25167865 tcattcttaaaattttcttaaaaaaatctttcttgatatatagcattgctc 25167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34482885 - 34482833
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||||    
T  34482885 tcattcttaaaattttcttaataaaatctttcttgatatatagcattgctcat 34482833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18037028 - 18036978
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||||||    
T  18037028 tcattcttaaatttttcttgaaaaaatctttcttgatatatatcattgctc 18036978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29737189 - 29737143
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcatt 47  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||    
T  29737189 tcattcttaaaattttcttaaaaaaatctttcttgatatatagcatt 29737143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37477095 - 37477145
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  37477095 tcattcttaaatttttcttgagaaaatctttcttgatatatagcattgctc 37477145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15238432 - 15238380
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    ||||||||||| ||||||||| ||| | |||||||||||||||||||||||||    
T  15238432 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctcat 15238380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36790481 - 36790528
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattg 48  Q
    |||||||| || ||||||||| |||| |||||||||||||||||||||    
T  36790481 tcattcttaaatttttcttgataaaaactttcttgatatatagcattg 36790528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11671 - 11620
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11671 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctca 11620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4446 - 4396
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4446 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 4396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28675198 - 28675148
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28675198 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 28675148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33695342 - 33695392
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33695342 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 33695392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33696746 - 33696696
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33696746 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 33696696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17176036 - 17176088
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcat 53  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  17176036 tcattcttgaaattttattgataaaatctttcttgatatatagcattgctcat 17176088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17705480 - 17705531
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctca 52  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17705480 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctca 17705531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6127325 - 6127275
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6127325 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 6127275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18365588 - 18365638
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  18365588 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 18365638  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18370852 - 18370902
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  18370852 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 18370902  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23291099 - 23291149
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  23291099 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 23291149  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25986980 - 25986930
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  25986980 tcattcttgaaattttcttaataaaatctttcttgatatatagcattgctc 25986930  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18889712 - 18889761
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  18889712 tcattcttgaaattttcttgataaa-tctttcttgatatatagcattgctc 18889761  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32702255 - 32702216
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatata 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  32702255 tcattcttgaaattttcatgaaaaaatctttcttgatata 32702216  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6031756 - 6031806
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  6031756 tcattcttaaaattttattgatgaaatctttcttgatatatagcattgctc 6031806  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11548603 - 11548647
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagca 45  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||    
T  11548603 tcattcttgaatttttcttgagaaaatttttcttgatatatagca 11548647  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 8515755 - 8515787
Alignment:
Q  16 tcttgaaaaaatctttcttgatatatagcattg 48  Q
    |||||| ||||||||||||||||||||||||||    
T  8515755 tcttgataaaatctttcttgatatatagcattg 8515787  T

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Target: scaffold0096 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41061 - 41011
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  41061 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 41011  T

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Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47900 - 47850
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  47900 tcattcttgaaattttcttgataaaatctttcttgataaatagcattgctc 47850  T

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Target: scaffold0665 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3118 - 3069
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgct 50  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  3118 tcattcttaaaattttattgataaaatctttcttgatatatagcattgct 3069  T

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Target: scaffold0228 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8452 - 8413
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatata 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8452 tcattcttgaaattttcttgataaaatctttcttgatata 8413  T

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Target: scaffold0228; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16034 - 15995
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatata 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  16034 tcattcttgaaattttcttgataaaatctttcttgatata 15995  T

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Target: scaffold0228; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25986 - 25947
Alignment:
Q  1 tcattcttgaaattttcttgaaaaaatctttcttgatata 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  25986 tcattcttgaaattttcttgataaaatctttcttgatata 25947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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