View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_42 (Length: 368)
Name: NF17168_low_42
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_42 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 21398757 - 21398403
Alignment:
| Q |
14 |
acttgtaagaatgttacctctttggcaaaaggattctgaggggcaaggtatctgttgccttggctgttaattgtgggttcagcactgcctccaatagcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21398757 |
acttgtaagaatgttacctctttggcaaaaggattctgaggggcaaggtatctgttgccttggctgttaattgtgggttcagcactgcctccaatagcat |
21398658 |
T |
|
| Q |
114 |
acatcacccagtgtgtatagtcattgtttaccacgtggaaatacccgtgtctgcatctgcaatattcgtaaacaacccattgttagtgcaagaactagac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21398657 |
acatcacccagtgtgtatagtcattgtttaccacgtggaaatacccgtgtctgcatctgcaatattcgtaaacaacccattgttagtgcaagaactagac |
21398558 |
T |
|
| Q |
214 |
acagaatcaatgaagcaatatatttataacactctttagcagaacagaggtccctctgagacacttggaagttggaatattggaacataaagaggtctag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21398557 |
acagaatcaatgaagcaatatatttataacactctttagcataacagaggtccctctgagacacttggaagttggaatattggaccataaagaggtctag |
21398458 |
T |
|
| Q |
314 |
ttgtcattttcacccaattttagtagacctctcctatactaagtgctcagtttcc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||| |
|
|
| T |
21398457 |
ttgtcattttcacccaattttagtagacctctcatatcctatgtggtcagtttcc |
21398403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 17910910 - 17910764
Alignment:
| Q |
28 |
tacctctttggcaaaaggattctgaggggcaaggtatctgttgccttggctgttaattgtgggttcagcactgcctccaatagcatacatcacccagtgt |
127 |
Q |
| |
|
|||||||||||||||||| || ||| ||| ||||||||| || |||||||| |||||||| |||||||| || |||||||||||||| ||||||| |
|
|
| T |
17910910 |
tacctctttggcaaaagggttaacaggagcattgtatctgttaccctggctgttgattgtggggtcagcacttccaccaatagcatacatttcccagtga |
17910811 |
T |
|
| Q |
128 |
gtatagtcattgtttaccacgtggaaatacccgtgtctgcatctgca |
174 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||| || ||||| |
|
|
| T |
17910810 |
gtatagtcattgttcaccacatggaaataaccatgtctacacctgca |
17910764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 43131953 - 43131860
Alignment:
| Q |
63 |
atctgttgccttggctgttaattgtgggttcagcactgcctccaatagcatacatcacccagtgtgtatagtcattgtttaccacgtggaaata |
156 |
Q |
| |
|
||||||| |||||||| || || || || | |||||| || |||||||||||||| ||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
43131953 |
atctgtttccttggctattgatggtagggttagcacttcccccaatagcatacatttcccagtgagtatagtcattgtttaccacatgaaaata |
43131860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 34287673 - 34287766
Alignment:
| Q |
63 |
atctgttgccttggctgttaattgtgggttcagcactgcctccaatagcatacatcacccagtgtgtatagtcattgtttaccacgtggaaata |
156 |
Q |
| |
|
||||||| ||||| |||||||| || || | ||||| ||||||||||||||||| ||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
34287673 |
atctgtttccttgactgttaatggttggatttgcacttcctccaatagcatacatttcccagtgagtgtagtcattgttcaccacatggaaata |
34287766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University