View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_45 (Length: 362)

Name: NF17168_low_45
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_low_45
NF17168_low_45
[»] chr8 (48 HSPs)
chr8 (60-223)||(10894527-10894688)
chr8 (75-226)||(15648124-15648273)
chr8 (75-229)||(15624336-15624488)
chr8 (87-229)||(15613807-15613949)
chr8 (74-227)||(15605954-15606105)
chr8 (74-227)||(15614307-15614458)
chr8 (87-229)||(15605454-15605596)
chr8 (74-229)||(15614125-15614277)
chr8 (74-229)||(15637661-15637815)
chr8 (74-227)||(15637294-15637445)
chr8 (74-227)||(15637477-15637629)
chr8 (98-229)||(15605795-15605924)
chr8 (139-229)||(15605652-15605742)
chr8 (87-229)||(15624164-15624305)
chr8 (87-229)||(15636941-15637081)
chr8 (87-229)||(15647952-15648093)
chr8 (74-229)||(15637111-15637264)
chr8 (10-207)||(16250407-16250599)
chr8 (149-223)||(15605343-15605417)
chr8 (149-223)||(15613696-15613770)
chr8 (139-229)||(15614004-15614095)
chr8 (139-222)||(20540862-20540945)
chr8 (149-223)||(15636830-15636904)
chr8 (149-223)||(15923839-15923913)
chr8 (139-208)||(38050224-38050293)
chr8 (60-125)||(4930230-4930294)
chr8 (151-223)||(10895849-10895921)
chr8 (184-223)||(15624088-15624127)
chr8 (184-223)||(15647876-15647915)
chr8 (75-129)||(15624519-15624572)
chr8 (87-128)||(15923950-15923991)
chr8 (251-291)||(15605729-15605769)
chr8 (251-299)||(15637802-15637850)
chr8 (151-227)||(23689219-23689295)
chr8 (75-126)||(15648307-15648357)
chr8 (75-129)||(287360-287413)
chr8 (61-206)||(25113374-25113517)
chr8 (178-223)||(8362295-8362340)
chr8 (88-129)||(15605122-15605162)
chr8 (88-129)||(15613474-15613515)
chr8 (92-129)||(17895030-17895067)
chr8 (251-291)||(15605911-15605951)
chr8 (251-291)||(15614082-15614122)
chr8 (251-291)||(15614264-15614304)
chr8 (251-291)||(15624292-15624332)
chr8 (251-291)||(15637068-15637108)
chr8 (251-291)||(15648080-15648120)
chr8 (151-203)||(23136464-23136516)
[»] chr3 (8 HSPs)
chr3 (60-227)||(5750579-5750746)
chr3 (60-227)||(5787538-5787705)
chr3 (88-208)||(30160474-30160593)
chr3 (91-208)||(20795354-20795470)
chr3 (184-227)||(2766121-2766164)
chr3 (139-203)||(37197829-37197893)
chr3 (10-49)||(30160610-30160649)
chr3 (92-129)||(6445174-6445211)
[»] chr5 (4 HSPs)
chr5 (60-223)||(501080-501242)
chr5 (60-229)||(36647934-36648101)
chr5 (151-223)||(27588603-27588675)
chr5 (151-203)||(9663083-9663135)
[»] scaffold0114 (1 HSPs)
scaffold0114 (60-223)||(34269-34430)
[»] chr4 (7 HSPs)
chr4 (60-207)||(17461900-17462045)
chr4 (10-209)||(37069615-37069806)
chr4 (11-125)||(13923218-13923330)
chr4 (151-208)||(18066791-18066848)
chr4 (75-129)||(24107-24160)
chr4 (151-223)||(24141-24213)
chr4 (151-223)||(13914762-13914834)
[»] chr6 (15 HSPs)
chr6 (10-214)||(33452249-33452450)
chr6 (88-208)||(21992612-21992731)
chr6 (139-226)||(15654065-15654152)
chr6 (139-226)||(15664018-15664105)
chr6 (10-214)||(13705427-13705623)
chr6 (151-208)||(27434709-27434766)
chr6 (173-229)||(33010454-33010509)
chr6 (251-297)||(15654029-15654075)
chr6 (139-203)||(4856970-4857034)
chr6 (139-203)||(11550248-11550312)
chr6 (61-129)||(15654195-15654262)
chr6 (61-129)||(15664144-15664211)
chr6 (251-297)||(15663982-15664028)
chr6 (92-129)||(4749520-4749557)
chr6 (12-49)||(32681524-32681561)
[»] chr2 (5 HSPs)
chr2 (111-229)||(11127748-11127866)
chr2 (251-345)||(11127675-11127761)
chr2 (151-208)||(20103505-20103562)
chr2 (139-176)||(31300006-31300043)
chr2 (149-209)||(21119850-21119910)
[»] chr1 (7 HSPs)
chr1 (88-208)||(19095355-19095474)
chr1 (151-226)||(8314046-8314121)
chr1 (151-227)||(22544225-22544301)
chr1 (178-226)||(45914946-45914994)
chr1 (173-223)||(46514353-46514403)
chr1 (173-226)||(3417290-3417342)
chr1 (151-223)||(15535296-15535368)
[»] scaffold0490 (1 HSPs)
scaffold0490 (88-208)||(9155-9274)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-208)||(52597-52654)
[»] chr7 (1 HSPs)
chr7 (178-227)||(7946575-7946624)
[»] scaffold0018 (1 HSPs)
scaffold0018 (151-199)||(67306-67354)
[»] scaffold0289 (1 HSPs)
scaffold0289 (151-226)||(22182-22257)
[»] scaffold0155 (1 HSPs)
scaffold0155 (157-223)||(26648-26714)
[»] scaffold0022 (2 HSPs)
scaffold0022 (75-129)||(101135-101188)
scaffold0022 (151-223)||(101082-101154)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 48)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 10894688 - 10894527
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||||| ||| |||||||||| || |||         |||||||||||||||||||||    
T  10894688 catgtattaatttacaattgagtcatga-tccattttgattggctcatgaaaaacaaatgagttataatcattttttt-attggttgatataaaataaat 10894591  T
Q  160 gtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||||  |||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  10894590 gtgtcataatcaattttgattggatgataagaaaacattaaatgatatgagaaatatgaagatg 10894527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 15648124 - 15648273
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgtt 174  Q
    ||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||  ||    
T  15648124 aaatgagtcatga-tccattttgattggctcatgaaaaacaaatgagtcatgatcctttttct-attggttgatataaaataaatgtgtcaaaatctttt 15648221  T
Q  175 ttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15648222 ttgattggatgataagaaaacattaaatgagatgagaaatatgaagatgtca 15648273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 15624336 - 15624488
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgtt 174  Q
    ||||||||||| | |||||||||||||||| || ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||  ||    
T  15624336 aaatgagtcatga-tccattttgattggctgatgaaaaacaaatgagtcatgatcctttttct-attggttgatataaaataaatgtgtcaaaatctttt 15624433  T
Q  175 ttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15624434 ttgattggatgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 15624488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 15613807 - 15613949
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttga 186  Q
    ||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||||||||||| ||||| ||   ||||| |||    
T  15613807 aatccattttgattggctcatgaaaaacaaatgagtcatgatgcttttttttattggttgatataaaataaatgtgtcaaaatccattccgattggatga 15613906  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  15613907 taagaaaacattaaatgagatgagaaatatgtagatgtcacgt 15613949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 15605954 - 15606105
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||| |    
T  15605954 caaatgagtcatga-tccattatgattggctcatgaaaaacaaatgagtcatgatcattttttt-attggttgatataaaataaatgtgtcaaaatccat 15606051  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    | | ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  15606052 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcac 15606105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 15614307 - 15614458
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||| |    
T  15614307 caaatgagtcatga-tccattatgattggctcatgaaaaacaaatgagtcatgatcattttttt-attggttgatataaaataaatgtgtcaaaatccat 15614404  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    | | ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  15614405 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcac 15614458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 15605454 - 15605596
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttga 186  Q
    ||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||||||||||| ||||| ||   ||||| |||    
T  15605454 aatccattttgattggctcatgaaaaacaaatgagtcatgatgtttttttttattggttgatataaaataaatgtgtcaaaatccattccgattggatga 15605553  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  15605554 taagaaaacattaattgagatgagaaatatgtagatgtcacgt 15605596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 15614125 - 15614277
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | || ||| |||||||||||||||| ||||||| |||||||||         ||||||||||||||||||||||||||| ||||| |    
T  15614125 caaatgagtcatga-tctattatgattggctcataaaaaacaaatgggtcatgatcttttttt--attggttgatataaaataaatgtgtcaaaatccat 15614221  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    | | ||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  15614222 tctgattggatgataaaaaaacattaaatgagatgagaaatatgaagatgtcacgt 15614277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 15637661 - 15637815
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||| | |    
T  15637661 caaatgagtcatgactccattatgattggctcatgaaaaacaaatgagtcatgatccttttttt-attggttgatataaaataaatgtgtcaaaattcat 15637759  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    | | ||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  15637760 tctgattggatgttaagaaaacattaaatgagatgagaaatatgaagatatcacgt 15637815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 15637294 - 15637445
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||| |    
T  15637294 caaatgagtcatga-tccattatgattggctcatgaaaaacaaatgagtcatgatccatttttt-attggttgatataaaataaatgtgtcaaaatccat 15637391  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    | | ||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  15637392 tgtcattggatgataggaaaacattaaatgagatgagaaatattaagatgtcac 15637445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 15637477 - 15637629
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | |||||| ||||||| |||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||| |    
T  15637477 caaatgagtcatgactccattatgattggatcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcaaaatccat 15637575  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    | | ||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  15637576 tctgattggatgataggaaaacattaaatgagatgagaaatattaagatgtcac 15637629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 15605795 - 15605924
Alignment:
Q  98 attggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacat 197  Q
    |||||||||||||| ||||||| |||||||||         ||||||||||||||||||||||||||| ||||| || | ||||| |||||| |||||||    
T  15605795 attggctcataaaaaacaaatgggtcatgatcttttttt--attggttgatataaaataaatgtgtcaaaatccattctgattggatgataaaaaaacat 15605892  T
Q  198 taaatgagatgagaaatatgaagatgtcacgt 229  Q
    ||||||||||||||||||||||||||||||||    
T  15605893 taaatgagatgagaaatatgaagatgtcacgt 15605924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 15605652 - 15605742
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    ||||||||||||||||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  15605652 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacgt 15605742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 15624164 - 15624305
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttga 186  Q
    |||||||||| |||||||||| ||| |||||||||||||||||         |||||||||||||||||||| |||||| ||||| |||| ||||| |||    
T  15624164 aatccattttaattggctcattaaaaacaaatgagtcatgatcctattttt-attggttgatataaaataaacgtgtcaaaatccattttgattggatga 15624262  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  15624263 taagaaaacattaaatgagaggacaaatatgaagatgccacgt 15624305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 15636941 - 15637081
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttga 186  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||| || | ||||| |||    
T  15636941 aatccattttgattgactcattaaaaacaaatgagtcatgatccttttttt-attggttgatataaaataaatgtgtcaaaatccattctgattggatga 15637039  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    ||| |||| ||||||||||||||||||||||||||||||||||    
T  15637040 taataaaa-attaaatgagatgagaaatatgaagatgtcacgt 15637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 15647952 - 15648093
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttga 186  Q
    ||||||||||||||||||||| ||| |||||||||||||||||         |||||||||||||||||||| ||| || ||||| |||| ||||| |||    
T  15647952 aatccattttgattggctcattaaaaacaaatgagtcatgatcctattttt-attggttgatataaaataaacgtgccaaaatccattttgattggatga 15648050  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  15648051 taagaaaacattaaatgagaggacaaatatgaagatgccacgt 15648093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 15637111 - 15637264
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgt 173  Q
    |||||||||||| | || ||| |||||||||||| ||| |||||||||||||| ||         ||||||||||||||||||||||||||| ||||| |    
T  15637111 caaatgagtcatga-tctattatgattggctcatgaaaaacaaatgagtcatggtcattttttt-attggttgatataaaataaatgtgtcaaaatccat 15637208  T
Q  174 tttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    | | ||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  15637209 tctgattgaatgataagaaaacattaaatgagatgagaaatatgaagatgacacgt 15637264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 16250599 - 16250407
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||||| ||||||||||||| |  |         ||||||||||||||||||| |||||| | ||||||||||||||||||| |    
T  16250599 agatgaaaatgatgaaaaatgagttgtctatatatata--ggaaaaaaatcatgtattaatttacaaataagtcatga-tccattttgattggctcatga 16250503  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagat 207  Q
    || | || ||||||||| ||         |||||||||||||||| |||||||||||||||  |||| ||||| ||||||||||||||||||||||||    
T  16250502 aaaataa-tgagtcatgctccttttttg-attggttgatataaaacaaatgtgtcataatctattttgattggatgataagaaaacattaaatgagat 16250407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 15605343 - 15605417
Alignment:
Q  149 ataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  15605343 ataaaataaatgtgtcaaaatccattttgattggatgataagaaaacattaaatgagatgagaaatatgaagatg 15605417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 15613696 - 15613770
Alignment:
Q  149 ataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||||||||||||||| |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  15613696 ataaaataaatgtgtcaaaatccgttttgattgtatgataagaaaacattaaatgagatgagaaatatgaagatg 15613770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 15614004 - 15614095
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatg-agaaatatgaagatgtcacgt 229  Q
    ||||||||||||||||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||| | |||||||||||| ||||||    
T  15614004 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgaaaaaatatgaagatatcacgt 15614095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 20540862 - 20540945
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    ||||||||||||||||||||||||||||||||| |||| |||||  ||||| ||||| ||||||||||| ||||||||||||||    
T  20540862 attggttgatataaaataaatgtgtcataatccattttgattggaggataaaaaaacgttaaatgagataagaaatatgaagat 20540945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 15636830 - 15636904
Alignment:
Q  149 ataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||||||||||||||  |||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  15636830 ataaaataaatgtgtccaaatccgttttgattggatgataaaaatacattaaatgagatgagaaatatgaagatg 15636904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 15923839 - 15923913
Alignment:
Q  149 ataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||||||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||    
T  15923839 ataaaataaatgtgtcaaaatctgttttgattggatgataagaaaatattaaatgagatgataaatatgaagatg 15923913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 38050224 - 38050293
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatg 208  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  38050224 attggatgatataaaataaatgtgtcataatccattttgattggatgataagaaaatattaaatgagatg 38050293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 4930294 - 4930230
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcat 125  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||    
T  4930294 catgtattaatttacaaatgagtcatga-tccattttgattggctcatgaaaaacaaatgagtcat 4930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 10895921 - 10895849
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||| ||||| |||| | || |||||||||||| |||||||||||||||||||||||| ||||||||    
T  10895921 aaaataaatgagtcatgatccatattgattggttgataaaaaaacattaaatgagatgagaaatttgaagatg 10895849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 15624088 - 15624127
Alignment:
Q  184 tgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15624088 tgataagaaaacattaaatgagatgagaaatatgaagatg 15624127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 15647876 - 15647915
Alignment:
Q  184 tgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15647876 tgataagaaaacattaaatgagatgagaaatatgaagatg 15647915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 15624519 - 15624572
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||| | |||||| |||||||||||||||| |||||||||||||||||    
T  15624519 aaatgagtcatga-tccattatgattggctcataaaaaacaaatgagtcatgatc 15624572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 15923950 - 15923991
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgat 128  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  15923950 aatccattttgattggctcatgaaaaacaaatgagtcatgat 15923991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15605729 - 15605769
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  15605729 tgaagatatcacgtgtacttttaatttgaaggaaggtaaat 15605769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 15637802 - 15637850
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaatgtttatta 299  Q
    ||||||| |||||||| |||| ||||||||||||| |||||||||||||    
T  15637802 tgaagatatcacgtgttcttttaatttgaaggaagttaaatgtttatta 15637850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 23689219 - 23689295
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    ||||| |||| |||||||| |  ||| ||||| |||||||||| |||||||||||||||  ||| ||||||||||||    
T  23689219 aaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatgaagaatgtgaagatgtcac 23689295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 15648307 - 15648357
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatg 126  Q
    ||||||||||| | |||||| |||||||||||||||| ||||||||||||||    
T  15648307 aaatgagtcatga-tccattatgattggctcataaaaaacaaatgagtcatg 15648357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 287413 - 287360
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||| | |||||||||||||||| |||||| | |||||||||||||||    
T  287413 aaatgagtcatga-tccattttgattggctaataaaaaataaatgagtcatgatc 287360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 25113374 - 25113517
Alignment:
Q  61 atgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatg 160  Q
    ||||||| |||||||| ||||| || | || ||||||||||||| || ||| | |||||||||||||||         ||||||| | ||| | ||| ||    
T  25113374 atgtattgatttacaattgagttatgattc-attttgattggctaatgaaaaataaatgagtcatgatctattttttgattggttaaaatata-taagtg 25113471  T
Q  161 tgtcataatccgttttaattggttgataagaaaacattaaatgaga 206  Q
     |||||||||  |||||||||| |||||| ||||||||||||||||    
T  25113472 agtcataatctattttaattggatgataaaaaaacattaaatgaga 25113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 8362340 - 8362295
Alignment:
Q  178 attggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||| ||||||||||||||||||||||||||  ||| ||||||||    
T  8362340 attggatgataagaaaacattaaatgagatgaagaatgtgaagatg 8362295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 15605122 - 15605162
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  15605122 atccattttgattggctcataaaa-aaaaatgagtcatgatc 15605162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 15613474 - 15613515
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  15613474 atccattttgattggctcatgaaaaaaaaatgagtcatgatc 15613515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 17895030 - 17895067
Alignment:
Q  92 attttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| | |||||||||||||||    
T  17895030 attttgattggctcataaaaaataaatgagtcatgatc 17895067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15605911 - 15605951
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    |||||||||||||||||| || |||||||||||| ||||||    
T  15605911 tgaagatgtcacgtgtacatttaatttgaaggaaagtaaat 15605951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15614082 - 15614122
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    ||||||| ||||||||| ||| |||||||||||||||||||    
T  15614082 tgaagatatcacgtgtatttttaatttgaaggaaggtaaat 15614122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15614264 - 15614304
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    |||||||||||||||||| || |||||||||||| ||||||    
T  15614264 tgaagatgtcacgtgtacatttaatttgaaggaaagtaaat 15614304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15624292 - 15624332
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  15624292 tgaagatgccacgtgtaattttaatttgaaggaaggtaaat 15624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15637068 - 15637108
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  15637068 tgaagatgtcacgtgtacatttaatttgaaggaagataaat 15637108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 15648080 - 15648120
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaat 291  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  15648080 tgaagatgccacgtgtaattttaatttgaaggaaggtaaat 15648120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 23136516 - 23136464
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatg 203  Q
    |||||||||| |||||||| |  ||| ||||| ||||||||||||||||||||    
T  23136516 aaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 23136464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 5750579 - 5750746
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaaca-caaatgagtcatgatcnnnnnnnnnattggttgatataaaataaa 158  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| | |||||||||||| |||         | ||||||||||||||||||    
T  5750579 catgtattaatttacaaatgagtcatga-tccattttgattggctcatgaaaaagcaaatgagtcatcatccttttttttactggttgatataaaataaa 5750677  T
Q  159 tgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    ||||||||||||| |||| ||||| |||||||||||||||| |||||||| | ||| ||||||||||||    
T  5750678 tgtgtcataatccattttgattggatgataagaaaacattagatgagatggggaatgtgaagatgtcac 5750746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 5787538 - 5787705
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaaca-caaatgagtcatgatcnnnnnnnnnattggttgatataaaataaa 158  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| | |||||||||||| |||         | ||||||||||||||||||    
T  5787538 catgtattaatttacaaatgagtcatga-tccattttgattggctcatgaaaaagcaaatgagtcatcatccttttttttactggttgatataaaataaa 5787636  T
Q  159 tgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    ||||||||||||| |||| ||||| |||||||||||||||| |||||||| | ||| ||||||||||||    
T  5787637 tgtgtcataatccattttgattggatgataagaaaacattagatgagatggggaatgtgaagatgtcac 5787705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 30160593 - 30160474
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgat 187  Q
    |||||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||| |||| ||||| ||||    
T  30160593 atccattttgattggctcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcataatccattttgattggatgat 30160495  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||||||||    
T  30160494 aagaaaacattaaatgagatg 30160474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 20795354 - 20795470
Alignment:
Q  91 cattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataag 190  Q
    ||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||| |||| ||||| ||||| |    
T  20795354 cattttgattggctcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcataatccattttgattggatgatatg 20795452  T
Q  191 aaaacattaaatgagatg 208  Q
    ||||||||||||| ||||    
T  20795453 aaaacattaaatgggatg 20795470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 2766121 - 2766164
Alignment:
Q  184 tgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  2766121 tgataagaaaacattaaatgagatgaagaatatgaagatgtcac 2766164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 37197893 - 37197829
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatg 203  Q
    ||||||| ||| |||||||||| |||||||| |  ||| ||||| ||||||||||||||||||||    
T  37197893 attggttaataaaaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 37197829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 30160649 - 30160610
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaa 49  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  30160649 agatgaaaataatgaaaaataaattgtctatatatagaaa 30160610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 6445174 - 6445211
Alignment:
Q  92 attttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| | |||||||||||||||    
T  6445174 attttgattggctcataaaaaataaatgagtcatgatc 6445211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 501242 - 501080
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    |||||||||||||||||||||||||| | || |||||||||||||||| ||| |||||||||||||||||         || | ||||||||||||||||    
T  501242 catgtattaatttacaaatgagtcatga-tctattttgattggctcatgaaaaacaaatgagtcatgatccttttttttatcgattgatataaaataaat 501144  T
Q  160 gtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||||  |||| ||||| ||||||||||  ||||||||| ||||||||||||||||||    
T  501143 gtgtcataatcaattttgattggatgataagaaagtattaaatgatatgagaaatatgaagatg 501080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 36648101 - 36647934
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||  || ||||||||| | || ||         ||||||||||||||||||||     
T  36648101 catgtattaatttacaaatgagtcatga-tccattttgattggttcatgtaaaacaaatgagccgtggtccttctttt-attggttgatataaaataaac 36648004  T
Q  160 gtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    ||| |||||||  |||| ||| |  |||||||||||||||||||||||   |||| ||||||| ||||||    
T  36648003 gtgacataatctattttgattagaagataagaaaacattaaatgagatagaaaatgtgaagatatcacgt 36647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 27588675 - 27588603
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||| |||||||| |  ||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||    
T  27588675 aaaataaatgagtcataattcaatttgattggatgataagaaaatattaaatgagatgaagaatgtgaagatg 27588603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 9663083 - 9663135
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatg 203  Q
    |||||||||| |||||||| |  ||| ||||| ||||||||||||||||||||    
T  9663083 aaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 9663135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 34269 - 34430
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||| |||         |||||||||||||||||||||    
T  34269 catgtattaatttacaaatgagtcat-aatccattttgattggctcatgaaaaacaaatgtgtcataatccttttttt-attggttgatataaaataaat 34366  T
Q  160 gtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||||  |||| ||| | ||||| |||| |||||||||| ||||||||||||||||||    
T  34367 gtgtcataatcaattttgattagatgatatgaaagcattaaatgatatgagaaatatgaagatg 34430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 17461900 - 17462045
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    ||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||| |||         |||||||||||||||||||||    
T  17461900 catgtattaatttacaaatgactcgttgatccattttgattggttcataaaacacaaatgagtcataatc--ttcttttattggttgatataaaataaat 17461997  T
Q  160 gtgtcataatccgttttaattggttgataagaaaacattaaatgagat 207  Q
    || ||||||||| |||| |||||||||||| |||||| ||||||||||    
T  17461998 gtatcataatccattttgattggttgataaaaaaacactaaatgagat 17462045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 37069615 - 37069806
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||  |||||||||||||||||||          ||| | |||||||||||||||||||| | ||||||||||||||||||  |    
T  37069615 agatgaaaatgatgaaaaacaaattgtctatatatagaaa----aaaaaacattttttaatttacaaatgagtcatga-tccattttgattggctcacga 37069709  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatga 209  Q
    || ||||||| ||||| |||         ||||||||||||||||||||||| |||  || | |||| ||||| ||||||||||||||||||||||||||    
T  37069710 aaaacaaatgtgtcataatccttttttt-attggttgatataaaataaatgtttca--attcattttgattggatgataagaaaacattaaatgagatga 37069806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 13923218 - 13923330
Alignment:
Q  11 gatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataaa 110  Q
    ||||||||||||||||||  |||||||||||||||| ||          |||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  13923218 gatgaaaatgatgaaaaacaaattgtctatatataggaa-aaaaaaaaacatgtattaatttacaaatgagtcatga-tccattttgattggctcatgaa 13923315  T
Q  111 acacaaatgagtcat 125  Q
    | |||||||||||||    
T  13923316 aaacaaatgagtcat 13923330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 18066791 - 18066848
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||||||| |  ||||||||| |||||||||||||||||||||||||    
T  18066791 aaaataaatgagtcataattcaatttaattggatgataagaaaacattaaatgagatg 18066848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 24107 - 24160
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||||| |||||||||||||||| |||||| | |||||||||||||||    
T  24107 aaatgagtcatta-tccattttgattggctaataaaaaataaatgagtcatgatc 24160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 24141 - 24213
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||| ||||| |||  |||| |||||||||| | ||| |||||||||||| ||||||| ||||||||    
T  24141 aaaataaatgagtcatgatctattttgattggttgatgaaaaatcattaaatgagaagagaaatttgaagatg 24213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 13914762 - 13914834
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||| ||||| |||  |||| |||||||||| | ||| |||||||||||| || |||| ||||||||    
T  13914762 aaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatgagaagataaatttgaagatg 13914834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 33452249 - 33452450
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||  |||||||||||||||| |||         ||| | |||||||||||||||||||| | ||||||||||||||||||| |    
T  33452249 agatgaaaatgatgaaaaacaaattgtctatatataggaagaaaaaaaa-cattttttaatttacaaatgagtcatga-tccattttgattggctcatga 33452346  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatga 209  Q
    || ||||||| ||||| |||         ||||||||||||||||||||||| ||||||| | |||| ||||| ||||||||||||||||||||||||||    
T  33452347 aaaacaaatgtgtcataatccttttttt-attggttgatataaaataaatgtttcataattcattttgattggatgataagaaaacattaaatgagatga 33452445  T
Q  210 gaaat 214  Q
    |||||    
T  33452446 gaaat 33452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 21992612 - 21992731
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgat 187  Q
    |||||||||||||||||||  ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||| |||| ||||| ||||    
T  21992612 atccattttgattggctcaagaaaaacaaatgagtcatgatcctcttttg-attggttgatataaaataaatgtgtcataatccattttgattggatgat 21992710  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||||||||    
T  21992711 aagaaaacattaaatgagatg 21992731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 15654152 - 15654065
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||  |||||||||||||| ||||||||||||||||    
T  15654152 attggttgatataaaataaatgtgtcataatccattttgattggatgataagaaagtattaaatgagatgataaatatgaagatgtca 15654065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 15664105 - 15664018
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||  |||||||||||||| ||||||||||||||||    
T  15664105 attggttgatataaaataaatgtgtcataatccattttgattggatgataagaaagtattaaatgagatgataaatatgaagatgtca 15664018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 13705427 - 13705623
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||  |||||||||||| ||||||          ||| | |||||||||||||||||||| | ||||||||||||||||||| |    
T  13705427 agatgaaaatgatgaaaaacaaattgtctatatctagaaa----aaaaaacattttttaatttacaaatgagtcatga-tccattttgattggctcatga 13705521  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatga 209  Q
    || ||||||| ||||| |||         ||||||||||||||||||||||| |||  || | |||| ||||| ||||||||||||||||||||||||||    
T  13705522 aaaacaaatgtgtcataatccttttttt-attggttgatataaaataaatgtttca--attcattttgattggatgataagaaaacattaaatgagatga 13705618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 27434766 - 27434709
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||||||| |  ||||||||| |||||||||||||||||||||||||    
T  27434766 aaaataaatgagtcataattcaatttaattggatgataagaaaacattaaatgagatg 27434709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 33010509 - 33010454
Alignment:
Q  173 ttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcacgt 229  Q
    ||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||    
T  33010509 ttttaattggttggtga-aaaacattaaatgagatgagcaatatgaagatgtcacgt 33010454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 15654075 - 15654029
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaatgtttat 297  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  15654075 tgaagatgtcatgtgtacttttaatttgaaggaaggaaaatgtttat 15654029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 4856970 - 4857034
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatg 203  Q
    ||||||| ||| |||||||||| |||||||| |  ||| ||||| ||||||||||||||||||||    
T  4856970 attggttaataaaaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 4857034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 11550312 - 11550248
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatg 203  Q
    ||||||| ||| |||||||||| ||||||||    ||||||||| ||||||||||||||||||||    
T  11550312 attggttaataaaaaataaatgagtcataatttaatttaattggatgataagaaaacattaaatg 11550248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 15654262 - 15654195
Alignment:
Q  61 atgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||||||| |  | ||||||||||||  ||| ||| |||||||||||||||||    
T  15654262 atgtattaatttacaaatgagtca-tgtttcattttgattggaacatgaaaaacaaatgagtcatgatc 15654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 15664211 - 15664144
Alignment:
Q  61 atgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||||||| |  | ||||||||||||  ||| ||| |||||||||||||||||    
T  15664211 atgtattaatttacaaatgagtca-tgtttcattttgattggaacatgaaaaacaaatgagtcatgatc 15664144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 15664028 - 15663982
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaatgtttat 297  Q
    ||||||||||| ||||||||| |||||||||||| | ||||||||||    
T  15664028 tgaagatgtcatgtgtacttttaatttgaaggaatgaaaatgtttat 15663982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 4749557 - 4749520
Alignment:
Q  92 attttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| | |||||||||||||||    
T  4749557 attttgattggctcataaaaaataaatgagtcatgatc 4749520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 32681561 - 32681524
Alignment:
Q  12 atgaaaatgatgaaaaatgaattgtctatatatagaaa 49  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  32681561 atgaaaataatgaaaaataaattgtctatatatagaaa 32681524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 11127866 - 11127748
Alignment:
Q  111 acacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgag 210  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||     
T  11127866 acacaaatgagtcatgatctttttttttattggttgatataaaataaatgtgtcataatccattttgattggttgataataaaatattaaatgagatgaa 11127767  T
Q  211 aaatatgaagatgtcacgt 229  Q
    ||||||||||||| |||||    
T  11127766 aaatatgaagatgccacgt 11127748  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 11127761 - 11127675
Alignment:
Q  251 tgaagatgtcacgtgtactttcaatttgaaggaaggtaaatgtttattatatacatataaagatagagataattttctctttgaaaccttttaac 345  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||        ||||  ||||||| ||||||||||||||||||||||||||    
T  11127761 tgaagatgccacgtgtactttcaatttgaaggaaggtaaatgtttat--------tatagggatagagctaattttctctttgaaaccttttaac 11127675  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 20103562 - 20103505
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||||||| |  ||| ||||| |||||||||||||||||||||||||    
T  20103562 aaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatgagatg 20103505  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 31300043 - 31300006
Alignment:
Q  139 attggttgatataaaataaatgtgtcataatccgtttt 176  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  31300043 attggttgatataaaataaatgtttcataatccttttt 31300006  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 21119910 - 21119850
Alignment:
Q  149 ataaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatga 209  Q
    ||||||| |||| |||||||| |  ||| ||||| |||||||||| |||||||||||||||    
T  21119910 ataaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatga 21119850  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 19095474 - 19095355
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgat 187  Q
    |||||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||| |||| ||||  ||||    
T  19095474 atccattttgattggctcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcataatccatttttattgaatgat 19095376  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||| ||||    
T  19095375 aagaaaacattaaatgggatg 19095355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 8314046 - 8314121
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    |||||||||| ||||| |||  |||| |||||||||||| ||||||||||||||||  |||||| |||||||||||    
T  8314046 aaaataaatgagtcatgatctattttgattggttgataaaaaaacattaaatgagaaaagaaatttgaagatgtca 8314121  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 22544225 - 22544301
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    ||||| |||| |||||||| |  ||| ||||| |||||||||| |||||||||||||||  ||| ||||||||||||    
T  22544225 aaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatgaagaatgtgaagatgtcac 22544301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 45914994 - 45914946
Alignment:
Q  178 attggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    ||||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  45914994 attggatgataagaaaacattaaatgagatgaagaatgtgaagatgtca 45914946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 46514403 - 46514353
Alignment:
Q  173 ttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||| |||||||||| | ||||||||||||||||||||||||  |||||||    
T  46514403 ttttgattggttgatgaaaaaacattaaatgagatgagaaattagaagatg 46514353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 3417342 - 3417290
Alignment:
Q  173 ttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    |||| |||||||||||| ||  |||||||||||||| |||||||||||||||||    
T  3417342 ttttgattggttgataaaaatgcattaaatgagatg-gaaatatgaagatgtca 3417290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 15535296 - 15535368
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    ||||| |||| |||||||| |  ||| ||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  15535296 aaaatgaatgagtcataattcaatttgattggatgataagaaaacattaaatgaaatgaagaatgtgaagatg 15535368  T

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Target: scaffold0490 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 9274 - 9155
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcataatccgttttaattggttgat 187  Q
    |||||||||||||||||||| ||| | |||||||||||||||         ||||||||||||||||||||||||| ||||||| |||| ||||| ||||    
T  9274 atccattttgattggctcatgaaaaataaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgttataatccattttgattggatgat 9176  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||| ||||    
T  9175 aagaaaacattaaatgggatg 9155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 52597 - 52654
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||||||| |  ||||||||| |||||||||||||||||||||||||    
T  52597 aaaataaatgagtcataattcaatttaattggatgataagaaaacattaaatgagatg 52654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 7946575 - 7946624
Alignment:
Q  178 attggttgataagaaaacattaaatgagatgagaaatatgaagatgtcac 227  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  7946575 attggatgataagaaaacattaaatgagatgaagaatatgaagatgtcac 7946624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 67306 - 67354
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacatta 199  Q
    |||||||||| ||||| |||| ||||||||||||||||| |||||||||    
T  67306 aaaataaatgagtcatgatccattttaattggttgataaaaaaacatta 67354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 22182 - 22257
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatgtca 226  Q
    |||||||||| ||||| ||   |||| |||||||||| | ||| ||||||||||||||||||||  ||||||||||    
T  22182 aaaataaatgagtcatgatatattttgattggttgatgaaaaagcattaaatgagatgagaaattagaagatgtca 22257  T

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Target: scaffold0155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 26714 - 26648
Alignment:
Q  157 aatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||| |||||||| |  ||| ||||| ||||||||||||||||||||||||||  ||| ||||||||    
T  26714 aatgagtcataattcaatttgattggatgataagaaaacattaaatgagatgaagaatgtgaagatg 26648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 101188 - 101135
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||| | |||||||||||||||| |||||| | |||||||||||||||    
T  101188 aaatgagtcatga-tccattttgattggctaataaaaaataaatgagtcatgatc 101135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 101154 - 101082
Alignment:
Q  151 aaaataaatgtgtcataatccgttttaattggttgataagaaaacattaaatgagatgagaaatatgaagatg 223  Q
    |||||||||| ||||| |||  |||| |||||||||| | ||| |||||||||||| || |||| ||||||||    
T  101154 aaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatgagaagaaaaatttgaagatg 101082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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