View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_47 (Length: 348)
Name: NF17168_low_47
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 55173389 - 55173053
Alignment:
| Q |
1 |
atgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173389 |
atgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagtacagagt |
55173290 |
T |
|
| Q |
101 |
atttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173289 |
atttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggta |
55173190 |
T |
|
| Q |
201 |
attgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaacaaactttggaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173189 |
attgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaacaaactttggaagaa |
55173090 |
T |
|
| Q |
301 |
caacctctgccttcacaacaacccgttattatgatga |
337 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
55173089 |
caacctctgcctttacaacaacccgttattacgatga |
55173053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27721597 - 27721690
Alignment:
| Q |
1 |
atgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgctcagta |
94 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| |||| | ||||||||||||| ||||| |||||||| |
|
|
| T |
27721597 |
atgcatgcaatggaaggcactgtggtgatacctttacaggtccaaacaaaccatacaaacctttcatatggactgaaaactggactgctcagta |
27721690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 27721910 - 27722015
Alignment:
| Q |
96 |
agagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactata |
195 |
Q |
| |
|
||||||||||| |||||| ||| || |||||||| ||||| ||||||||||||||||| || |||||||| || ||||| | | ||||||||||||| |
|
|
| T |
27721910 |
agagtatttggagatccaccatctcaaagatctgcagaagacattgccttctcagttgctcgcttcttctctaagcatggatctttagtcaactactata |
27722009 |
T |
|
| Q |
196 |
tggtaa |
201 |
Q |
| |
|
|||||| |
|
|
| T |
27722010 |
tggtaa |
27722015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 27722106 - 27722155
Alignment:
| Q |
279 |
ggtggaacaaactttggaagaacaacctctgccttcacaacaacccgtta |
328 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
27722106 |
ggtggaacaaattttggtagaacaacctcagcctttacaacaacacgtta |
27722155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University