View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_48 (Length: 345)
Name: NF17168_low_48
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 155 - 329
Target Start/End: Original strand, 37685569 - 37685743
Alignment:
| Q |
155 |
aaacaatataaggaagccgcttgatttgcgtctttgagttttctttaaacacgcaatgaaaacataaaatgtcttgaacacaattattctagaattgtat |
254 |
Q |
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| T |
37685569 |
aaacaatataaggaagccgcttgatttgcgtctttgagttttctttacacacgcaatgaaaacataaa-tgtcttgaacacaattattctagaattgtat |
37685667 |
T |
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| Q |
255 |
atgacgttgccattataatatcatatgctaactgaactcgataaaagttttccaaccaa-ttttatcaacaatcat |
329 |
Q |
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| T |
37685668 |
atgacgttgccattataatatcatatgctaactgaactcgataaaagttttccaaccaatttttatcaacaatcat |
37685743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 37685363 - 37685520
Alignment:
| Q |
1 |
agaaaaaggaacaacccacaaatattatcagttacaaaggaataaactatnnnnnnnnnnnnnnnnn-tccctcacattaaaggtagaaagtgaataata |
99 |
Q |
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| T |
37685363 |
agaaaaaggaacaacccacaaatattatcagttacaaaggaataaactaaaaaaaaataaaaaaaaaatccctcacattaaaggtagaaagtgaataata |
37685462 |
T |
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| Q |
100 |
gaaaaataataaacaaagaccacagcactcccaaaagcctacagaattatgcaggaaa |
157 |
Q |
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| T |
37685463 |
gaaaaataataaacaaagaccacagcactaccaaaagcctacaaaattatgcaggaaa |
37685520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46884973 - 46884924
Alignment:
| Q |
1 |
agaaaaaggaacaacccacaaatattatcagtta-caaaggaataaacta |
49 |
Q |
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| T |
46884973 |
agaaaaaagaacaatccacaaatattatcagttataaaaggaataaacta |
46884924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 155 - 329
Target Start/End: Complemental strand, 7498192 - 7498019
Alignment:
| Q |
155 |
aaacaatataaggaagccgcttgatttgcgtctttgagttttctttaaacacgcaatgaaaacataaaatgtcttgaacacaattattctagaattgtat |
254 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7498192 |
aaacaatataaggaagccgcttgatttgcgtctatgagttttctttacacacgcaatgaaaacataaa-tgtcttgaacacaattattctagaattgtat |
7498094 |
T |
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| Q |
255 |
atgacgttgccattataatatcatatgctaactgaactcgataaaagttttccaaccaattttatcaacaatcat |
329 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7498093 |
atgaagttgccattataatatcatatgctaactgaactcgataaaagttttccaaccaattttatcaacaatcat |
7498019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7498398 - 7498245
Alignment:
| Q |
1 |
agaaaaaggaacaacccacaaatattatcagttacaaaggaataaactatnnnnnnnnnnnnnnnnntccctcacattaaaggtagaaagtgaataatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7498398 |
agaaaaaggaacaacccacaaatattatcagttacaaaggaataaactaaaaaaaaaaaaaaaac---ccctcacattaaaggtagaaagtgaataatag |
7498302 |
T |
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| Q |
101 |
aaaaataataaacaaagaccacagcactcccaaaagcctacagaattatgcaggaaa |
157 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
7498301 |
aaaaataataaacaaagaccacagcactaccaaaagcctacagaattctgcaggaaa |
7498245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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