View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_5 (Length: 757)
Name: NF17168_low_5
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_5 |
 | |
|
| [»] scaffold0135 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 113; Significance: 8e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 218 - 472
Target Start/End: Complemental strand, 12073037 - 12072777
Alignment:
| Q |
218 |
attttgtatgcaaaacctgccctttttctcatcacagtaaaaaataagcataagaaagtcattcacaatcctaagca----cagttcacta--attgcaa |
311 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| || |||||||||| ||||| |||| |||||||||||| || | || ||||||| |
|
|
| T |
12073037 |
attttgtatgcaagacctggtctttttcttatcacagtcaagaataagcatatgaaagacatttgcaatcctaagcataagcataaccctcctattgcaa |
12072938 |
T |
|
| Q |
312 |
tcataagaatggtcgcacctatgatgaatgttaaaggcaagccaattcttcaaattgaggaagtgtttacgcagtagttttgccttttttgttgtacctt |
411 |
Q |
| |
|
|||||||||||||| || |||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12072937 |
tcataagaatggtcacatctatgacgaacggtagaggcaagccaattcttcaaattgaagaagtgtttacgcagtagttatgccttttttgttgtaccta |
12072838 |
T |
|
| Q |
412 |
ttaaatgtcaaatatagtgatgatatatcagtttggctattttatgttttgttgtcctttt |
472 |
Q |
| |
|
|| |||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
12072837 |
ttcaatgtcaaatgcagtgatgatatatcactttggctatctcatgttttgttgtcctttt |
12072777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 9200351 - 9200228
Alignment:
| Q |
18 |
ataaacaggtaacagcaaagatacattctatgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaaca |
117 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
9200351 |
ataaacatgtaa-agcaaagataccttctatgtttacaagggagtttgggtatcaaatttctacatatgtaacattgagtgatccaaacgaaaacgaaca |
9200253 |
T |
|
| Q |
118 |
tgaagttatgatagagaaaaggtat |
142 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
9200252 |
tgaagttatgatagagaagaggtat |
9200228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 9202085 - 9201990
Alignment:
| Q |
47 |
atgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
142 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
9202085 |
atgtttacaagggagtttgggtattaaatttctacatatgtaacattgagtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
9201990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 167 - 72
Alignment:
| Q |
47 |
atgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
142 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
167 |
atgtttacaagggagtttgggtattaaatttctacatatgtaacattgagtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
72 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University