View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_50 (Length: 331)
Name: NF17168_low_50
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 28596533 - 28596225
Alignment:
| Q |
7 |
atgaattgataataaatatttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaattaatttaatgatgaaagagactaacaga |
106 |
Q |
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| T |
28596533 |
atgaattgataataaatctttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaattaatttaatgatgaaagagactaacaga |
28596434 |
T |
|
| Q |
107 |
caccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttataattccagc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28596433 |
caccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttatgattccagc |
28596334 |
T |
|
| Q |
207 |
agatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgatagaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28596333 |
agatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggatttttgctgtattcagaaacgatagaa |
28596234 |
T |
|
| Q |
307 |
tctgtagat |
315 |
Q |
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||||||||| |
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| T |
28596233 |
tctgtagat |
28596225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 32494756 - 32494445
Alignment:
| Q |
7 |
atgaattgataataaatatttatataaacaccgtacaattgtagaaaaaggaacgcaaatgtataaaagaatt---aatttaatgatgaaagagactaac |
103 |
Q |
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| T |
32494756 |
atgaattgatagtaaataattctataaacaccgtacaattgtagaaacaggaacgaaaatgtattaaagaatttgcaatttaatgatgaaagagactaca |
32494657 |
T |
|
| Q |
104 |
agacaccattaatagcaattggcaaacaaatgatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttataattcc |
203 |
Q |
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| T |
32494656 |
tggcaccatcaatagcaattggcaaacgaatgatgcattctgatgaagaaaaaaatttgcaaaatcaattgatagcactgcatatacttcttatgattcc |
32494557 |
T |
|
| Q |
204 |
agcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgata |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
32494556 |
agcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagtctgacttaaaagtagtaggatttttgctgtattcagaaacgata |
32494457 |
T |
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| Q |
304 |
gaatctgtagat |
315 |
Q |
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|||||||||||| |
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| T |
32494456 |
gaatctgtagat |
32494445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 28591603 - 28591751
Alignment:
| Q |
167 |
attaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagactt |
266 |
Q |
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|||| |||| ||||||||| || |||||||| || ||||| || || || ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
28591603 |
attagttgacagcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagtcagactt |
28591702 |
T |
|
| Q |
267 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatctgtagat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591703 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatctgtagat |
28591751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 160 - 299
Target Start/End: Original strand, 28586508 - 28586647
Alignment:
| Q |
160 |
ttgtaaaattaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagt |
259 |
Q |
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||||| ||||| |||| ||||||||||| |||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
28586508 |
ttgtataattagttgactgcactgcatatgcttcttatgactccagccgatccggttaagggttcaatatctcccatctttatcatagcagttgcaaagt |
28586607 |
T |
|
| Q |
260 |
cagacttaaaagttgtaggattgttgctgtattcagaaac |
299 |
Q |
| |
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| || || |||||||||||||||||||||||||| ||||| |
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| T |
28586608 |
cggatttgaaagttgtaggattgttgctgtattctgaaac |
28586647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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