View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_52 (Length: 325)
Name: NF17168_low_52
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 51805569 - 51805276
Alignment:
| Q |
15 |
gaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaaattaactggaacaatcccttcttctgtttgtaaacttccaaagcttc |
114 |
Q |
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| T |
51805569 |
gaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaagttaactggaacaatcccttcttctgtttgtaaacttccaaagcttc |
51805470 |
T |
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| Q |
115 |
aggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaacacttagaatattgtcactttacgacaatttctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805469 |
aggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaacacttagaatattgtcactttacgacaatttctt |
51805370 |
T |
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| Q |
215 |
aagtggacacgttcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaacaagttgtctggccctttgccagaacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805369 |
aagtggacacgttcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaacaagttgtctggccctttgccagaacat |
51805276 |
T |
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