View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_53 (Length: 324)
Name: NF17168_low_53
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 40593470 - 40593783
Alignment:
| Q |
1 |
atcaatgttcaaattctgcctagaagatatattcatatttagtgtctaacggcgtctcaaatagtaaaaccaaacaatgtgtaatgatttgcactacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593470 |
atcaatgttcaaattctgcctagaagatatattcatatttagtgtctaacggtgtctcaaatagtaaaaccaaacaatgtgtaatgatttgcactacaca |
40593569 |
T |
|
| Q |
101 |
aaaatctagctaaaacattggaagcaaattttatctaccttcatttcaatt---ctcaagagtcaagaccacattacaaggcacatgccaataatcatcc |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593570 |
aaaatctagctaaaacattggaagcaaattttatctaccttcatttcaataatgctcaagagtcaagaccacattacaaggcacatgccaataatcatcc |
40593669 |
T |
|
| Q |
198 |
tacaaagtcaagatgtctaagttgcacaccttcaacaccatgcctaagttccaatgtcaatgaaacagatccaatccaagtgatctcacaacatcatgtc |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593670 |
tacaaagtcaagatgtctaagttgcacaccttcaacaccatgcctaagttccaatgtcaatgaaacagatccaatccaagtgatctcacaacatcatgtc |
40593769 |
T |
|
| Q |
298 |
cactatgtctatat |
311 |
Q |
| |
|
|||||||||||||| |
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| T |
40593770 |
cactatgtctatat |
40593783 |
T |
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