View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_54 (Length: 323)
Name: NF17168_low_54
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 38596346 - 38596605
Alignment:
| Q |
1 |
cattcttggagttcttcatgtatttttcagaggataaaaatccttagattcaattgacattctacgcatgaaacaaacattagggaataaaattgttctc |
100 |
Q |
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| T |
38596346 |
cattcttggagttcttcatgtatttttcagaggataaaaatccttagattcaattgacattctacgcatgaaacaaacattagggaataaaattgttctc |
38596445 |
T |
|
| Q |
101 |
ttatatcttaccatcaaaatgaaaattagaggtcattcttcttcaaaccattttggttc-nnnnnnntaatcaaataatcttcttaaaagatccatgtcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38596446 |
ttatatcttaccatcaaaatgaaaattagaggtcattcttcttcaaaccattttggttcaaaaaaaattatcaaataatcttcttaaaagatccatgtcc |
38596545 |
T |
|
| Q |
200 |
acgagaattcttgcataatggtcaaatacaccattcttgatggcatcatcaagacacagt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38596546 |
acgagaattcttgcataatggtcaaatacaccattcttgatggcatcatcaagacacagt |
38596605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 49073838 - 49073794
Alignment:
| Q |
60 |
ttctacgcatgaaacaaacattagggaataaaattgttctcttata |
105 |
Q |
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||||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
49073838 |
ttctacgcatgaaacaaacattatggaat-aatttgttctcttata |
49073794 |
T |
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