View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_58 (Length: 317)
Name: NF17168_low_58
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_58 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 16421325 - 16421030
Alignment:
| Q |
22 |
acttctaatttcatttgtccaacatggtgccaattgaatggaacatgcaacatttcaaaatagagggaaatatggtaaatgctgcataaaatttcataat |
121 |
Q |
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| T |
16421325 |
acttctaatttcatttgtccaacatggtgctaattgaatggaacatgcaacatttcaaaatagagggaaatatggtaaatgctgcataaaatttcataat |
16421226 |
T |
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| Q |
122 |
gcagatttttcctgccgttgaatttgcaggacaaattaaaagagttacaaaggattgtattagggaaaacctgcaggtttgctattgctttaataatata |
221 |
Q |
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| T |
16421225 |
gcagatttttcctgccgctgaatttgcagtacaaattgaaagagttacaaaggattgtattagggaaaacctgcaggtttgctattgctttaataatata |
16421126 |
T |
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| Q |
222 |
tagatgtccttcaattcgaccacatttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactcttta |
317 |
Q |
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| T |
16421125 |
tagatgtccttcaattcgaccacatttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactcttta |
16421030 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 10423514 - 10423575
Alignment:
| Q |
140 |
tgaatttgcaggacaaattaaaagagttacaaaggattgtattagggaaaacctgcaggttt |
201 |
Q |
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| T |
10423514 |
tgaagttgcagtacaaattggaagagttgcaaaggatagaattagggcaaacctgcaggttt |
10423575 |
T |
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