View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_65 (Length: 291)
Name: NF17168_low_65
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 1600441 - 1600188
Alignment:
| Q |
23 |
aatttgtatcgttgtcatgaagtgaatgctaaggctgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctt |
122 |
Q |
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| T |
1600441 |
aatttgtatcgttgtcatgaagtgaatgctaaggttgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctt |
1600342 |
T |
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| Q |
123 |
tgagcgacgaaaataggaaattcttctctagtcatggatgccttcttgaatgaaccctgaaatgtaagatgcttttttgttgagatttacttctgaaaga |
222 |
Q |
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| T |
1600341 |
tgagtgacgaaaataggaaattcttctcgagtcatggatgccttcttgaatgaaccctgaaatgtaagatgcttttttgttgagatttacttctgaaaga |
1600242 |
T |
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| Q |
223 |
aattacttattgtttataagtctgtgcataataattgtgtaagttagtattttt |
276 |
Q |
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| T |
1600241 |
aattacttattgtttataagtctgtgcataataattgcgtaagttaatattttt |
1600188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 55505285 - 55505420
Alignment:
| Q |
14 |
agagagatcaatttgtatcgttgtcatgaagtgaatgctaaggctgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctg |
113 |
Q |
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| T |
55505285 |
agagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtattttcaaggccatcattgagaaagataacagcgccacctg |
55505384 |
T |
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| Q |
114 |
attttcctttgagcgacgaaaataggaaattcttct |
149 |
Q |
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| T |
55505385 |
gttttcatttgagtgacgaaaagaagaaactcttct |
55505420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 640815 - 640730
Alignment:
| Q |
33 |
gttgtcatgaagtgaatgctaaggctgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgatttt |
118 |
Q |
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| T |
640815 |
gttgtaataaagtgaatgctaatgtcgttgactcaatggtattttcaaggccatcattgagaaagatagtaactccacctggtttt |
640730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 38267799 - 38267894
Alignment:
| Q |
77 |
ttaaggccatccttgagaaagatagcagctccacctgattttcctttgagcgacgaaaataggaaattcttctctagtcatggatgccttcttgaa |
172 |
Q |
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| T |
38267799 |
ttaagcccatccctgagaaagatagctgctccacctgattttcctacgaccgacagaaataggacactcttcttgcgtcatggatgccttcttgaa |
38267894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 37937752 - 37937650
Alignment:
| Q |
68 |
atggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctttgagcgacgaaaataggaaattcttctctagtcatggatgccttc |
167 |
Q |
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|||||| ||||||| |||||||||||||| |||| ||||||||| ||||||| |||| | |||||| ||| ||||||| ||||||||||||||| |
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| T |
37937752 |
atggtagttttaagcccatccttgagaaa--tagctgctccacctagttttcctatgagtgtaagaaatagaaaactcttctcgcgtcatggatgccttc |
37937655 |
T |
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| Q |
168 |
ttgaa |
172 |
Q |
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||||| |
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| T |
37937654 |
ttgaa |
37937650 |
T |
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