View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_low_66 (Length: 280)
Name: NF17168_low_66
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_66 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 6249020 - 6249126
Alignment:
| Q |
164 |
tgatgtgattttactatgaaactctaccaacaccacagagagatagactatggtatcactctttagaaaaaataaagaatacaaatcatgtgatccatct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6249020 |
tgatgtgattttactatgaaactctaccaacaccacagagagatagactatggtatcactctttagaaaaaataaagaatacaaatcatgtgatccatct |
6249119 |
T |
|
| Q |
264 |
ccttcat |
270 |
Q |
| |
|
||||||| |
|
|
| T |
6249120 |
ccttcat |
6249126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 6248874 - 6248981
Alignment:
| Q |
18 |
taattaattgatgataagagtagatgagtagtacactgtatataggaaatagggtagtcatcaagttcaattttttacttttacgaagcacaagctttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6248874 |
taattaattgatgataagagtagatgagtagtacactctatataggaaatagggtagtcatcaagttcaattttttacttttacgaagcacaagctttga |
6248973 |
T |
|
| Q |
118 |
attaatcc |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
6248974 |
attaatcc |
6248981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 43047178 - 43047282
Alignment:
| Q |
166 |
atgtgattttactatgaaactctaccaacaccacagagagatagactatggtatcactctttagaaaaaataaagaatacaaatcatgtgatccatctcc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43047178 |
atgtgattttactatgaaactctaccaacaccacagagagacagactatggtatcactctttagaaaaaatgaagaatacaaatcatgtgatccatctcc |
43047277 |
T |
|
| Q |
266 |
ttcat |
270 |
Q |
| |
|
||||| |
|
|
| T |
43047278 |
ttcat |
43047282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 43032826 - 43032906
Alignment:
| Q |
18 |
taattaattgatgataagagtagatgagtagtacactgtatataggaaatagggtagtcatcaagttcaattttttacttt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
43032826 |
taattaattgatgataagagtagatgagtagtacactgtatataggaaatagggtagccatcaagttcagatttttacttt |
43032906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University