View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_67 (Length: 279)
Name: NF17168_low_67
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 39280955 - 39280703
Alignment:
| Q |
17 |
aatttcttcaccaaacatttgttcaatcaatcccaaacatttctctgttgccccagttttacagagagccttaataaggccattataagtaatattatca |
116 |
Q |
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| T |
39280955 |
aatttcttcaccaaacatttgttcaatcaatcccaaacatttctctgttgccccagttttacagagagccttaataaggccattataagtaatattatca |
39280856 |
T |
|
| Q |
117 |
aggggacaccctctaaatcgcatttcaccaacaagcttatctacttgttgaattaactctagcctaagaaatgcatgaatcagcgtattgtatgttacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39280855 |
aggggacaccctctaaatcgcatttcaccaacaagcttatctgcttgttgaatcaactctagccttagaaatgcatgaatcagcgtattgtatgttacag |
39280756 |
T |
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| Q |
217 |
tgttagcgataacaccctccaagagcatgtcacgatacaaaccctatgcttct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39280755 |
tgttagcgataacaccctccaagagcatgtcacgatacaaacccaatgcttct |
39280703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 17349259 - 17349492
Alignment:
| Q |
27 |
ccaaacatttgttcaatcaatcccaaacatttctctgttgccccagttttacagagagccttaataaggccattataagtaatattatcaaggggacacc |
126 |
Q |
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|||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
17349259 |
ccaaacatttcctcaatcaatcccaaacctttctctattgccccagttttacagagagctttaataaggccattataagtaatattatcaaggggaaacc |
17349358 |
T |
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| Q |
127 |
ctctaaatcgcatttcaccaacaagcttatctacttgttgaattaactctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgat |
226 |
Q |
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| T |
17349359 |
ctcgaaatagcatttcattaacaagcttatacgcttgttgaatcgaatctcccctaagaaatgcgtgaattaacgtattgtatgttatagtgttagcaat |
17349458 |
T |
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| Q |
227 |
aacaccctccaagagcatgtcacgatacaaaccc |
260 |
Q |
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| T |
17349459 |
aacaccctccaagaacatgtcatgatacaaaccc |
17349492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 69 - 269
Target Start/End: Original strand, 17349526 - 17349726
Alignment:
| Q |
69 |
ccagttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgcatttcaccaacaagcttatctacttgttgaa |
168 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||| ||||||||| |
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| T |
17349526 |
ccagttttacagagagctttaataaggccattataagtaatattatcaaggggaaaccctcgaaatagcatttcattaacaagcttatacgcttgttgaa |
17349625 |
T |
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| Q |
169 |
ttaactctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaagagcatgtcacgatacaaaccctatgcttc |
268 |
Q |
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| T |
17349626 |
tcgaatctcccctaagaaatgcgtgaattaacgtattgtatgttatagtgttagcaataacaccctccaagaacatgtcatgatacaaacccaacgcttc |
17349725 |
T |
|
| Q |
269 |
t |
269 |
Q |
| |
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| |
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|
| T |
17349726 |
t |
17349726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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