View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_73 (Length: 252)
Name: NF17168_low_73
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34465627 - 34465859
Alignment:
| Q |
1 |
agtactctccatcaccaacaatacatcatttaaggatcaagctagagaaaatataccattctagaactcccaaataattcaaacaacttagtgccacacc |
100 |
Q |
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| T |
34465627 |
agtattctccatcaccaacaatacatcatttaaggatcaagctagagaaaatataccattctagaactcccaaataattcaaacaacttagtgccacacc |
34465726 |
T |
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| Q |
101 |
tgagtataaatctggcaacctcaatgttatgnnnnnnntgaatgcaattctgttattaatgttaagacaaatcatttgatgatttggtagttccgtccaa |
200 |
Q |
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| T |
34465727 |
tgagtataaatctggcaaccccaatgttatgaaaaaaatgaatgcaattctgttattaatgttaagacaaatcatttgatgatttggtagttccgtccaa |
34465826 |
T |
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| Q |
201 |
tcaaagagctaagaaactgctctccgctttgaa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34465827 |
tcaaagagctaagaaactgctctccgctttgaa |
34465859 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27807442 - 27807489
Alignment:
| Q |
1 |
agtactctccatcaccaacaatacatcatttaaggatcaagctagaga |
48 |
Q |
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|||||||||||||||||||| | ||| | ||||||||||||||||||| |
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| T |
27807442 |
agtactctccatcaccaacagttcattaattaaggatcaagctagaga |
27807489 |
T |
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