View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_77 (Length: 250)
Name: NF17168_low_77
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 49547029 - 49546789
Alignment:
| Q |
1 |
ccccattttgagggaattttctgttgcaatgaaaaacaagccccctattcaaagccattccctttcctccttttttacccaaagtcattcactcccctcc |
100 |
Q |
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| T |
49547029 |
ccccattttaaggggattttctgttgcaatgaaaaacaagccccctattcaaagccattccctttcctccttttttacccaaagccattcactcccctcc |
49546930 |
T |
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| Q |
101 |
aaaatcacaaacaatgcct--aagaataaatcatcataa-gnnnnnnncaagagactcccacattgtaatcattatgtcaggattcctcatttgtccttt |
197 |
Q |
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| T |
49546929 |
aaaatcacaaacaatgcctaaaagaataaatcatcataacaaaaaaaaaaagagactcccacattgtaatcattatgtcatgattcctcatttgtctttt |
49546830 |
T |
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| Q |
198 |
tcttttaacagatcctcctcctaattcagttcatatatttt |
238 |
Q |
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| T |
49546829 |
tcttttaacagatcctcctcctaattcagctcatatttttt |
49546789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 49443948 - 49443886
Alignment:
| Q |
168 |
cattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcat |
231 |
Q |
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|||||||| |||||||||||||| || ||||||| |||||||||||||||| |||||| |||| |
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| T |
49443948 |
cattatgttaggattcctcattt-tctttttcttccaacagatcctcctcctcattcagctcat |
49443886 |
T |
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