View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_8 (Length: 560)
Name: NF17168_low_8
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 11 - 544
Target Start/End: Original strand, 14739936 - 14740469
Alignment:
| Q |
11 |
caaaggaaggagatggagagtatccgctgaaaagtaaagagacttgtggaggaagcaaaccaatatcagttgttgtgtgatacacagaaataagcaatga |
110 |
Q |
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| T |
14739936 |
caaaggaaggagatggagagtatccgctgaaaagtaaagagacttgtggaggaagcaaaccaatatcagttgttttgtgatacacagaaataagcaatga |
14740035 |
T |
|
| Q |
111 |
ttnnnnnnngcataaaaataaaggcacaatgtcaataggcatcatttctaaatatactaaagaaaatgaaaaatgacgagaaaaccaacaaacatacctg |
210 |
Q |
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| T |
14740036 |
ttaaaaaaagcataaaaataaaggcacaatgtcaataggcatcatttctaaatatactaaagaaaatgaaaaatgacgagaaaaccaacaaacatacctg |
14740135 |
T |
|
| Q |
211 |
aaaagtatcacttgtcatagtgagagacttgacacctttaagtgcactcaatagctcaaatacacactcagcacgatattgttcactttgtggatagtca |
310 |
Q |
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| T |
14740136 |
aaaagtatcacttgtcatagtgagagacttgacacctttaagtgcactcaatagctcaaatagacactcagcacgatattgttcactttgtggatagtca |
14740235 |
T |
|
| Q |
311 |
aactcaagaccaatatttgcatcaactatggagatcggactaaccacgacaaattttagtgtcggagtgcttgtgcaagttaaggacgaaatattcggag |
410 |
Q |
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| T |
14740236 |
aactcaagaccaatatttgcatcaactatggagatcggactaaccacgacaaattttagtgtcggagtgcttgtgcaagttaaggacgaaatattcggag |
14740335 |
T |
|
| Q |
411 |
cattgattgtaactgtacaacagtcataatgatcataatccaaaaaagaagatttagaatgaatgttcaatgtccttaatgtggaactttcaatagcgat |
510 |
Q |
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| T |
14740336 |
cattgattgtaactgtacaacagtcataatgatcataatccaaaaaagaagatttagaatgaatgttcaatgtccttaatgtggaactttcaatagcgat |
14740435 |
T |
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| Q |
511 |
ctcgtttacgttcttccaaataaaattatacaag |
544 |
Q |
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| T |
14740436 |
ctcgtttacgttcttccaaataaaattatacaag |
14740469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 544
Target Start/End: Complemental strand, 17586276 - 17585734
Alignment:
| Q |
11 |
caaaggaaggagatggagagtatccgctgaaaagtaaagagacttgtggaggaagcaaaccaatatcag---ttgttgtgtgatacacagaaa--taagc |
105 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||| ||||| |
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| T |
17586276 |
caaaggaaggagatggagagtatccgccgaaaagtaaagagactaatggaggaagcaaaccaagatcgacgattattgtgtcatacatagaaaaataagc |
17586177 |
T |
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| Q |
106 |
aatgattnnnnnnng----cataaaaataaaggca-caatgtcaataggcatcatttctaaatatactaaagaaaatgaaaaatgacgagaaaaccaaca |
200 |
Q |
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|| |||| || |||| ||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
17586176 |
aacgattaattaaaaaaaacacaaaacaaaaggcaacaatgtcaataggcatcacttgtaaatatactaaagaaaat-aaaaatgacgagaaaacaaaca |
17586078 |
T |
|
| Q |
201 |
aacatacctgaaaagtatcacttgtcatagtgagagacttgacacctttaagtgcactcaatagctcaaatacacactcagcacgatattgttcactttg |
300 |
Q |
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| T |
17586077 |
aagatacctgaaaagtatcacttgtcatagtgagagacttgacacctttaagtgcactcaatagctcaaatacacactgagcagcatattgttcgctttg |
17585978 |
T |
|
| Q |
301 |
tggatagtcaaactcaagaccaatatttgcatcaactatggagatcggactaaccacgacaaattttagtgtcggagtgcttgtgcaagttaaggacgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
17585977 |
tggatagtcaaactcaagaccaatatttgcatcaacaatggagatcagattaaccaggacaaattttagtgtcggagtgcttgagcaagataaggacgaa |
17585878 |
T |
|
| Q |
401 |
atattcggagcattgattgtaactgtacaacagtcataatgatcataatccaaaaaagaagatttagaatgaatgttcaatgtccttaatgtggaacttt |
500 |
Q |
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||||||||||||| || |||||||| ||||||||||||||||||||| ||| |||||| ||||| |||||| ||||||||| | |||||||| ||| |
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| T |
17585877 |
atattcggagcatcaatcttaactgtatgacagtcataatgatcataatctaaacaagaagggttagagtgaatggtcaatgtccattatgtggaatttt |
17585778 |
T |
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| Q |
501 |
caatagcgatctcgtttacgttcttccaaataaaattatacaag |
544 |
Q |
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| T |
17585777 |
caatagtgatctcgtttatgtactgccaaatacaattatacaag |
17585734 |
T |
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