View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_81 (Length: 244)
Name: NF17168_low_81
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 38596166 - 38596320
Alignment:
| Q |
18 |
tgatcatcaaaggataagctttctagagttatagacatggtcatcagactataagcttacatcaaatgatgatgaatggttgacttttatgtattatacc |
117 |
Q |
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| T |
38596166 |
tgatcatcaaaggataagctttctagagttatagacatggtcatcagacaataagcttacatcagatgatgatgaatggttgagttttatgtattatacc |
38596265 |
T |
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| Q |
118 |
cacaaataatcatctagactctgccttccgcgatcaaaggaagaggctggataat |
172 |
Q |
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| T |
38596266 |
cacaaataatcatcaagactctgccttccgtgatcaaaggaagaggctggataat |
38596320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 38596318 - 38596352
Alignment:
| Q |
197 |
aatgcttttataagatacttcattctcatattctt |
231 |
Q |
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| T |
38596318 |
aatgcttttataagatacttcattctcacattctt |
38596352 |
T |
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