View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_82 (Length: 244)

Name: NF17168_low_82
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_low_82
NF17168_low_82
[»] chr1 (2 HSPs)
chr1 (1-226)||(49547094-49547319)
chr1 (10-54)||(32123584-32123628)
[»] chr3 (4 HSPs)
chr3 (10-53)||(21777206-21777249)
chr3 (16-54)||(42668172-42668210)
chr3 (5-50)||(35586173-35586218)
chr3 (3-54)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (3-53)||(1175862-1175912)
chr5 (3-53)||(12150688-12150738)
chr5 (4-50)||(33740020-33740066)
chr5 (11-56)||(13839473-13839518)
[»] chr7 (2 HSPs)
chr7 (11-54)||(13858445-13858488)
chr7 (3-52)||(7181389-7181438)
[»] chr8 (2 HSPs)
chr8 (1-49)||(32874847-32874894)
chr8 (10-53)||(39418173-39418216)
[»] chr4 (2 HSPs)
chr4 (3-52)||(56439290-56439339)
chr4 (3-54)||(34713068-34713117)
[»] chr2 (1 HSPs)
chr2 (3-48)||(38216438-38216483)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 49547094 - 49547319
Alignment:
Q  1 atttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactatnnnnnnnntgtgcaagatttctccaatttcccccctactcttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |||||||||||||||||||| ||||||| ||    
T  49547094 atttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactataaaaaaaatgtggaagatttctccaatttcccctctactctccc 49547193  T
Q  101 tcccctcgaaactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttaccagtggaaattagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49547194 tcccctcgaaactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttacccgtggaaattagt 49547293  T
Q  201 ttccgaagtagatataatgcatgaac 226  Q
    | ||||||||||||||||||||||||    
T  49547294 tcccgaagtagatataatgcatgaac 49547319  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 32123584 - 32123628
Alignment:
Q  10 tatattaatgataaacattcatttatcattatctacaaaaacact 54  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  32123584 tatattaatgataaacattcatttatcattctttacaaaaacact 32123628  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 21777249 - 21777206
Alignment:
Q  10 tatattaatgataaacattcatttatcattatctacaaaaacac 53  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  21777249 tatattaatgataaacattcatttatcattctctacaaaaacac 21777206  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 42668172 - 42668210
Alignment:
Q  16 aatgataaacattcatttatcattatctacaaaaacact 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668172 aatgataaacattcatttatcattatctacaaaaacact 42668210  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 35586218 - 35586173
Alignment:
Q  5 aaaagtatattaatgataaacattcatttatcattatctacaaaaa 50  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  35586218 aaaaatatattaatgataaactttcatttatcattctctacaaaaa 35586173  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 42157784 - 42157733
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 54  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||| ||||    
T  42157784 ttaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcact 42157733  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 1175912 - 1175862
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 53  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  1175912 ttaaaaatatattaatcataaacattcatttatcattctctacaaaaacac 1175862  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 12150688 - 12150738
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 53  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  12150688 ttaaaaatatattaatcataagtattcatttatcattatctacaaaaacac 12150738  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 33740066 - 33740020
Alignment:
Q  4 taaaagtatattaatgataaacattcatttatcattatctacaaaaa 50  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||    
T  33740066 taaaattatattaattataaacattgatttatcattatctaaaaaaa 33740020  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 13839518 - 13839473
Alignment:
Q  11 atattaatgataaacattcatttatcattatctacaaaaacactat 56  Q
    |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  13839518 atattaatcataaatattcatttatcattctctacaaaaccactat 13839473  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 13858445 - 13858488
Alignment:
Q  11 atattaatgataaacattcatttatcattatctacaaaaacact 54  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  13858445 atattaatcataagcattcatttatcattatctacaaaaacact 13858488  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 7181438 - 7181389
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 52  Q
    |||||| ||||||||| |||| ||||| ||||||||| ||||||||||||    
T  7181438 ttaaaaatatattaatcataagcattcttttatcattctctacaaaaaca 7181389  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32874847 - 32874894
Alignment:
Q  1 atttaaaagtatattaatgataaacattcatttatcattatctacaaaa 49  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  32874847 atttaaaa-tatattaatcataaacattcatttttcattatctacaaaa 32874894  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 39418173 - 39418216
Alignment:
Q  10 tatattaatgataaacattcatttatcattatctacaaaaacac 53  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  39418173 tatattaatcataaacattcatttatcattccctacaaaaacac 39418216  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 56439339 - 56439290
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 52  Q
    |||||| |||||||||||| ||||||||| ||||||| ||||||| ||||    
T  56439339 ttaaaaatatattaatgattaacattcatctatcattctctacaataaca 56439290  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34713068 - 34713117
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 54  Q
    |||||| ||||||||| ||||||||||||||||||   ||||||||||||||    
T  34713068 ttaaaaatatattaatcataaacattcatttatca--ctctacaaaaacact 34713117  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 38216483 - 38216438
Alignment:
Q  3 ttaaaagtatattaatgataaacattcatttatcattatctacaaa 48  Q
    |||||| ||||||||| |||||||||||| ||||||| ||||||||    
T  38216483 ttaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

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