View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_86 (Length: 238)
Name: NF17168_low_86
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_86 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 33289507 - 33289286
Alignment:
| Q |
17 |
agatactagtgttaaaggaaataagagaccaacacatactagctagtatcagatctgaaagactacgaggaatcgaagtagtatgcattgaagtttgtct |
116 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33289507 |
agatactagtattaaaggaaataagagacctacacatactagctagtatcagatctgaaagactatgaggaatcgaagtagtatgcattgaagtttgtct |
33289408 |
T |
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| Q |
117 |
cgattagatccaagtgtctaaataaactttgatgtcatttaattaccaattttccacatatatccaaggaataacaatgagatgctactccaaatactcc |
216 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33289407 |
cgattagatccaagtgtctgaataaattttgatgtcatttaattaccaattttccacatatatccaaggaataacaatgagatgctactccaaatactcc |
33289308 |
T |
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| Q |
217 |
cctccctgtgtgtaggtaggat |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
33289307 |
cctccctgtgtgtaggtaggat |
33289286 |
T |
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