View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_89 (Length: 237)
Name: NF17168_low_89
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 11709421 - 11709280
Alignment:
| Q |
81 |
ctcaaaagaagaaatagtttgaaaa-gacaataagccatactaacctataaaagaagctcatatacaagtctaactgatgtcttttttaccttaacaaac |
179 |
Q |
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| T |
11709421 |
ctcaaaagaagaaatagtttgaaaaagacaataagccatactaacctataaaagaagctaatatacaagtctaactgatgtcttttttaccttaacaaac |
11709322 |
T |
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| Q |
180 |
tttattgtggaagttgcaaggcaactaacaagaagtaagttt |
221 |
Q |
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| T |
11709321 |
tttattgtgcaagttgcaaggcaactaacaagaaataagttt |
11709280 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 11710131 - 11709939
Alignment:
| Q |
37 |
caaaatgacattcattttagtaatatgcgactagtttgaaattcctc-------aaaag--aagaaatagtttgaaaagacaataagccatactaaccta |
127 |
Q |
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| T |
11710131 |
caaaatgacatacattttagtaatatgtgaccagtttgaaattccttcaaaaaaaaaagcaaaaaaacagtttgcaaagacaataaaccatgctaatcta |
11710032 |
T |
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| Q |
128 |
taaaagaagctcatatacaagtctaactgatgtcttttttaccttaacaaactttattgtggaagttgcaaggcaactaacaagaagtaagttt |
221 |
Q |
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| T |
11710031 |
taaaggaagctcatg-acaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagttt |
11709939 |
T |
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