View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_9 (Length: 559)
Name: NF17168_low_9
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 38093114 - 38092649
Alignment:
| Q |
1 |
ggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaattgtccgaaggaatcccattgtt |
100 |
Q |
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| T |
38093114 |
ggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaattgtccgaaggaatcccattgtt |
38093015 |
T |
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| Q |
101 |
tccttttt-ccaatatttctcattcaagaaaacaacatatagggtttctttccttctgcaccctttgagtcaattctgcatgctttgttgtctccattag |
199 |
Q |
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| T |
38093014 |
tccttttttccaatatttctcattcaagaaaacaacatatagggtttcttg-----tgcaccctttgagtcaattctgcatgctttgttgtctccattag |
38092920 |
T |
|
| Q |
200 |
ccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacggttgcttccgata |
299 |
Q |
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| T |
38092919 |
ccctgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttcttttttggctcagaactcacgacggttgcttccgata |
38092820 |
T |
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| Q |
300 |
caacgatgctggaaaccgggaagattgccaacaaagcaccaccggcggagaagagacgagtccggttttggtgaatagttgcaagagctgatttgcactt |
399 |
Q |
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| T |
38092819 |
caaagacgctggacaacggcaagagtgccgacaaagcacctccggcggagaagagacgagttcggttttggtgaatagttcccagagctgatttgcagtt |
38092720 |
T |
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| Q |
400 |
atggattggatcagtgtggccttgtgccacagccacggttgctgccatccaaacacggttcaagtaactca |
470 |
Q |
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| T |
38092719 |
atggattggttcagtgtggccttgtgccacagccatggttgctgccatccaaacacggttcatgtaactca |
38092649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 196 - 470
Target Start/End: Complemental strand, 38089937 - 38089666
Alignment:
| Q |
196 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacggttgcttcc |
295 |
Q |
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| T |
38089937 |
ttagccttgaccccaacaattcatgtacataactttctggagagaatcatcggtttgtctcagcttctcttcaaccttagaactca---cggttgcgtcc |
38089841 |
T |
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| Q |
296 |
gatacaacgatgctggaaaccgggaagattgccaacaaagcaccaccggcggagaagagacgagtccggttttggtgaatagttgcaagagctgatttgc |
395 |
Q |
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| T |
38089840 |
gatacaacgacgctggacagtggcaagagtgccgacaaagcaccgcccgcagagaagagacgagttcggttttggtgaatagttccaagagctgttttgc |
38089741 |
T |
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| Q |
396 |
acttatggattggatcagtgtggccttgtgccacagccacggttgctgccatccaaacacggttcaagtaactca |
470 |
Q |
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| T |
38089740 |
acttatagattggatcagtgtggccttgtgccaccgccactgttgctgccatccaaacacggttcaaataactca |
38089666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 341 - 470
Target Start/End: Complemental strand, 38096058 - 38095929
Alignment:
| Q |
341 |
ccggcggagaagagacgagtccggttttggtgaatagttgcaagagctgatttgcacttatggattggatcagtgtggccttgtgccacagccacggttg |
440 |
Q |
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| T |
38096058 |
ccggcggagaagagacgagttcggttctggtgaatagatccgacggctgttttgcacttgtggcctggatcggtgtggccttgcgccaccgctacggttg |
38095959 |
T |
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| Q |
441 |
ctgccatccaaacacggttcaagtaactca |
470 |
Q |
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| T |
38095958 |
ctgccatccaaacacggttcaagtaactca |
38095929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 38096191 - 38096104
Alignment:
| Q |
196 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatg |
283 |
Q |
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| T |
38096191 |
ttagccttgaccccagcaattcatgtacataactttccgaagagaatcatcggttcttcttagcttctcatccgcttcagaactcatg |
38096104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 38092604 - 38092571
Alignment:
| Q |
511 |
gcctaacaaacagtaggaaagtgtttgatgagtt |
544 |
Q |
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| T |
38092604 |
gcctaaaaaacagtaggaaagtgtttgatgagtt |
38092571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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