View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_93 (Length: 234)
Name: NF17168_low_93
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 7502076 - 7501919
Alignment:
| Q |
60 |
atccaatcgttaacgatgtcatctccactttccccggtggttacaattcattcttctccgatgcgttcacttcccttcaccatcatactaattctcaccg |
159 |
Q |
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| T |
7502076 |
atccaatcgttaacgatgtcatctccactttccccggtggttacagttcattcttctccgatgcgttcccttcccttcaccatcatactaattctcaccg |
7501977 |
T |
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| Q |
160 |
ttcctattctcctccaccagaattgataaacgccagtgatatatgtatatacatggag |
217 |
Q |
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| T |
7501976 |
ttcctatcctcctccaccagaattgatacacgccattgatatatgtatatacatggag |
7501919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7510948 - 7510905
Alignment:
| Q |
1 |
taaataattaaaccggtagcaagtaatgagaagaagaaagtttg |
44 |
Q |
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| T |
7510948 |
taaataattaaaccggtagcaagtaatgagaagaagaaagtttg |
7510905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 27240912 - 27241001
Alignment:
| Q |
77 |
gtcatctccactttccccggtggttacaattcattcttctccgatgcgttcacttcccttcaccatcatactaattctcaccgttcctat |
166 |
Q |
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| T |
27240912 |
gtcatctccactttccctggtggttaccgttcctttttctccgacgcattcccttccctgcaccatcttaataattctcattgttcctat |
27241001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 27246441 - 27246482
Alignment:
| Q |
77 |
gtcatctccactttccccggtggttacaattcattcttctcc |
118 |
Q |
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| T |
27246441 |
gtcatctccactttccctggtggttaccattccttcttctcc |
27246482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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