View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_low_98 (Length: 208)
Name: NF17168_low_98
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_low_98 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 5718880 - 5719057
Alignment:
| Q |
14 |
tttaaaaatgaaaatcactatatattatatctttcctcctcattttatataatactttattttcccttcaaaaaatatccatattttttaaaatatgaaa |
113 |
Q |
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| T |
5718880 |
tttaaatatgaaaatcactatatattatatctttcctcctcattttatataatactttattttcccttcaaaaaatatccatattttttaaaatatgaaa |
5718979 |
T |
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| Q |
114 |
atgttggtgagcataaacataaacatacaagagtcatgatatcaaacaattaactgagatgaacctgttggggccaat |
191 |
Q |
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| T |
5718980 |
atgttggtgagcataaacataaacatacaagagtcatgatatcaaacaattaactgagatgaacctgttggggccaat |
5719057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 5686738 - 5686847
Alignment:
| Q |
14 |
tttaaaaatgaaaatcactatatattatatctttcctcctcattttatataatactttattttcccttcaaaaaatatccatattttttaaaatatgaaa |
113 |
Q |
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| T |
5686738 |
tttaaatatgaaaatcactatgt--tatatctttcctcctcattttatataatactttattttcccttcaaaaagtatccatatttttttaaatatgaaa |
5686835 |
T |
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| Q |
114 |
atgttggtgagc |
125 |
Q |
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| T |
5686836 |
atcttggtgagc |
5686847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 5686876 - 5686941
Alignment:
| Q |
126 |
ataaacataaacatacaagagtcatgatatcaaacaattaactgagatgaacctgttggggccaat |
191 |
Q |
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| T |
5686876 |
ataagcataaacatataagagtcataatatcaaacaattaactgagataaacctgttggggccaat |
5686941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 5665907 - 5665967
Alignment:
| Q |
131 |
cataaacatacaagagtcatgatatcaaacaattaactgagatgaacctgttggggccaat |
191 |
Q |
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| T |
5665907 |
cataaatatataagagtcataataacaaacaattaattgagatgaacctgttggggccaat |
5665967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 5657596 - 5657679
Alignment:
| Q |
45 |
tttcctcctcattttatataatactttattttcccttcaaaa---aatatccatattttttaaaatatgaaaatgttggtgagc |
125 |
Q |
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||||||||| ||||||||||||||||||||||| | ||| || ||||||||||| | |||||||||||||||||||||| |
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| T |
5657596 |
tttcctccttgttttatataatactttattttccaatataaataaaaaatccatattttgttaaatatgaaaatgttggtgagc |
5657679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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